Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag1123 | ATGGCGAAGATCTCACACAGAAACCAGAAGAGCTCTGCAAATGCTAATAAACAGGTGGAAAAGAAGGTGAAGAGGACCCGTAAAACTGTCCCACGTGATGCTCCCGTGCAGCGCAGCTCTATTCACCGTGGCGTCACAAGGCATCGATGGACGGGTAGATATGAGGCGCATTTGTGGGACAAGAATTGTTGGAACGAATCACAGAACAAGAAAGGAAGACAAGGAGCATATATTGATGAGGAAGCAGCAGCTCGTGCTTATGACTTGGCCGCATTGAAATATTGGGGGCCAGATACTATTCTTAATTTCCCATTATCAATATATGAAGAGGAGTTTAAAGAAATGGAAGGACGATCGAGAGAAGAATACATTGGATCTTTGAGGAGAAAAAGTAGTGGTTTCTCTCGTGGAGTTTCGAAATATCGAGGAGTTGCAAAGCATCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGCCTTTGGCAATAAATATCTCTATCTCGGAACATACGCTACCCAAGAAGAAGCGGCCACAGCTTATGACATGGCGGCAATCGAATATCGCGGCCTTAATGCCATCACAAACTTCGACCTCAGCTGCTACATCAAGTGGCTCCGTCCTAATAACAACCCTGACAGTCCAAATGAACAAAACAACCCTGTTAACCAAGAAATTAAACCAAATGACTCTATTCACAACATTGTTAACATTACTAACATTCATACACAAGTACCAAATTACCCTTGCAGTCTGTCATTCCACCCTGTTTGTGGAACCACTGCAATGCAGCCATATTCGGGCGGTGGCACCGTCACCAGCACCTCAGCGTCATCAGCTTTGGGGCTTCTTCTGCAATCGACCAAGTTCAAGGAAATGTCGGAAAGAATATCAGCAGTTGACTCTCCACCCACACCATTATCGGAATACTCAATCTCATCGATACGACACAGCTTTCCCGATGATATCCAGACTTACTTTGACTTTCAAGAAGATGGTAACTACACAGAGGATCATGGTGACATCATGAGTAGTACTATTTTTGGCGACTTAAACTCATTAATCAATATTTCATTATGA | 1080 | 43.8 | MAKISHRNQKSSANANKQVEKKVKRTRKTVPRDAPVQRSSIHRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYIDEEAAARAYDLAALKYWGPDTILNFPLSIYEEEFKEMEGRSREEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRAFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAITNFDLSCYIKWLRPNNNPDSPNEQNNPVNQEIKPNDSIHNIVNITNIHTQVPNYPCSLSFHPVCGTTAMQPYSGGGTVTSTSASSALGLLLQSTKFKEMSERISAVDSPPTPLSEYSISSIRHSFPDDIQTYFDFQEDGNYTEDHGDIMSSTIFGDLNSLINISL | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 7687688 | 7689994 | + | Conep20aG0116400.1 | Cone20ag1123 | 461027 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag1123 | 359 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Cone20ag1123 | 359 | SUPERFAMILY | DNA-binding domain | 40 | 106 | IPR016177 | GO:0003677(InterPro) | |
| Cone20ag1123 | 359 | Gene3D | AP2/ERF domain | 139 | 200 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | Gene3D | AP2/ERF domain | 42 | 106 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | CDD | AP2 | 139 | 200 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 23 | 217 | - | - | |
| Cone20ag1123 | 359 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cone20ag1123 | 359 | SMART | rav1_2 | 140 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | SMART | rav1_2 | 41 | 110 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | SUPERFAMILY | DNA-binding domain | 139 | 200 | IPR016177 | GO:0003677(InterPro) | |
| Cone20ag1123 | 359 | FunFam | AP2-like ethylene-responsive transcription factor | 139 | 200 | - | - | |
| Cone20ag1123 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 41 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 140 | 198 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | PRINTS | Ethylene responsive element binding protein signature | 42 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | PRINTS | Ethylene responsive element binding protein signature | 180 | 200 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone20ag1123 | 359 | Pfam | AP2 domain | 139 | 190 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag0595 | Cone-Chr18:2992268 | Cone20ag1123 | Cone-Chr20:7687688 | 2.57E-09 | dispersed | |
| Cone18ag0626 | Cone-Chr18:3211989 | Cone20ag1123 | Cone-Chr20:7687688 | 1.36E-109 | dispersed | |
| Cone19ag0534 | Cone-Chr19:4366127 | Cone20ag1123 | Cone-Chr20:7687688 | 1.98E-60 | dispersed | |
| Cone20ag1123 | Cone-Chr20:7687688 | Cone5ag1468 | Cone-Chr5:9723706 | 2.92E-76 | dispersed | |
| Cone11ag0939 | Cone-Chr11:7668317 | Cone20ag1123 | Cone-Chr20:7687688 | 1.65E-115 | wgd | |
| Cone17ag0285 | Cone-Chr17:1367243 | Cone20ag1123 | Cone-Chr20:7687688 | 6.89E-212 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45649 | PF03106 | WRKY | 1.80E-26 | CL0274 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag1123 | K09285 | - | vvi:100255268 | 423.705 |