Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1129 ATGGAGAGGAAGAAGTATCCGATCGGAGCTGAGTATTATACACTGTATGAGGAGGTTGGGCAGGGTGTGAGCGCTTCGGTTCACCGTGCTCTTTGTAAGGCTCTCAATGAGATCGTCGCCATCAAGATCCTCGACTTTGAACGCAGCAATTCCGATTTGAATAACATCTCCCGGGAAGCACAAATCATGAACTTGGTTGACCACCCCAATATCCTTAAATCCAACTGCTCCTTTGTGAGTGATCATAGTCTGTGGGTTGTCATGCCGTACATGGCTGGGGGGTCATGTCTCCACATATTGAAAGCTTCTCATCCAGATGGTTTCGAGGAAGTAGTTATAGCAACAATATTGCGGGAGACATTGAAGGGCTTGGAGTATCTTCATTCTCATGGGCTCATACATCGAGATGTCAAAGCTGGGAATATTCTCCTTGATGCACGGGGGCATATTAAGTTGGGGGATCTTGGTGTATCTGCTTGCCTTTTTGATTCAGGTGATAGGCAACGCTTGAGGAATACATTTGTCGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAACTACATGGTTATGACTTCAAGGCTGATATATGGTCTTTTGGTATAACTGCGCTGGAGCTTGCACATGGCCATGCTCCTTTCTCAAGGTATCCTCCAATGAAGGTGTTGCTGATGACCTTGCAAAATGCACCTCCTGGCCTTGATTATGAACGGGACAAGAAATTTTCGAAGTCTTTCAGGGAGATAATTGCTAGTTGTTTGGTTAAAGATCCTTCAAAACGGCCTTCTTCAAAGAAGTTGTTAAAGTATTCTTTTTTCAAGCAAGCGCGATCAAGTGATTATCTTGTACGTACTCTTTTGGAGGGGCTGCCTGCTCTTGGTGACCGCATCAAAGCATTGAAGATAAAGGAAGAAGATATGCTAGCACAAAAGAAAATACCAGATGGGCAAATGGAAGAAATGTCACAGAATGAATATAAACGAGGTATTAGTTGCTGGAAATTCGATCTTGAAGATGTAAAGGCTCAGGCAGCCTTGATCCAGGATGTTGAGGATACTAGCTCTGATGCTAATCAAGTAGGTAATTCAGGTTCGAGTCCTCTTGATGTGTCAGAGAATAATGCAATGCAGAACCAATCAGCTCATCCACCACTGATTGATTCAGCCAGTAATGAGGCAAAAATTAGATGTGACAAATCTGACGACGAGTGTAAAGCCACTAGTTCATGCTACGAACAACATATACAGAAATCTTCACCTCCTCATGATCATTATGCAATCAATTCAGGTGAAAAGCCTAATACAGAAAGCAGTAAAGGAATTTTTGATGGCACTGCTAACCAGGGTCATAGGAAGGAGAATTCACAAGAAGCTAGCATACCACCTTCAAAAGGAGAGAGTATTGCAGTTCCTCAGGCAATAGATTACTTGCCTTCTGAACTTCATTCGAAAGCAGCCAAGACATCAGCATCACAGAGCGAGGAACTTGATGAGAAGGCAAAAGCACCAGTTGTTCAGCAAAAAGGACGTTTCAAAGTCACATCAGAGAATGTTGAGCTAGAAAAGGTCACACCATCCCCTGTACTTCAAAAGAGCCAGAGCATGCAGGGGATTCCTTCGCAGCATACTCCTGTTCCCGTGCCATTAATTCCTTCACCTATAGTACCTGACCTGACAGCACCCACTCCTTCCTCGAATTCTATATTCCAAGCATTGCAGTCTCTTTTGCAGTCAAATATTGTTCAAAGGGATAATATTCTAAGTTTGATGAAGCAACTTGCGAATGGTGACACTACAGGAGGGCTTACTGCGGCAGTGGAGAAATCTATGCTCGAAGTGGTTCACGACAGGGAAAAGGATTTACTTAATGAAGTTTCCGAATTTCAATGGAGCCTTATATGTGCCCAAGAAGAGCTCCAGAAACAAAAATCCGACAGCAGTGAGGTTAAAAACTGA 1959 43.7 MERKKYPIGAEYYTLYEEVGQGVSASVHRALCKALNEIVAIKILDFERSNSDLNNISREAQIMNLVDHPNILKSNCSFVSDHSLWVVMPYMAGGSCLHILKASHPDGFEEVVIATILRETLKGLEYLHSHGLIHRDVKAGNILLDARGHIKLGDLGVSACLFDSGDRQRLRNTFVGTPCWMAPEVMEQLHGYDFKADIWSFGITALELAHGHAPFSRYPPMKVLLMTLQNAPPGLDYERDKKFSKSFREIIASCLVKDPSKRPSSKKLLKYSFFKQARSSDYLVRTLLEGLPALGDRIKALKIKEEDMLAQKKIPDGQMEEMSQNEYKRGISCWKFDLEDVKAQAALIQDVEDTSSDANQVGNSGSSPLDVSENNAMQNQSAHPPLIDSASNEAKIRCDKSDDECKATSSCYEQHIQKSSPPHDHYAINSGEKPNTESSKGIFDGTANQGHRKENSQEASIPPSKGESIAVPQAIDYLPSELHSKAAKTSASQSEELDEKAKAPVVQQKGRFKVTSENVELEKVTPSPVLQKSQSMQGIPSQHTPVPVPLIPSPIVPDLTAPTPSSNSIFQALQSLLQSNIVQRDNILSLMKQLANGDTTGGLTAAVEKSMLEVVHDREKDLLNEVSEFQWSLICAQEELQKQKSDSSEVKN 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7711788 7717857 + Conep20aG0117000.1 Cone20ag1129 461033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1129 652 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cone20ag1129 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1129 652 SUPERFAMILY Protein kinase-like (PK-like) 11 566 IPR011009 -
Cone20ag1129 652 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1129 652 MobiDBLite consensus disorder prediction 353 387 - -
Cone20ag1129 652 MobiDBLite consensus disorder prediction 413 466 - -
Cone20ag1129 652 CDD STKc_OSR1_SPAK 13 274 - -
Cone20ag1129 652 MobiDBLite consensus disorder prediction 483 504 - -
Cone20ag1129 652 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cone20ag1129 652 MobiDBLite consensus disorder prediction 431 463 - -
Cone20ag1129 652 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone20ag1129 652 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1129 652 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cone20ag1129 652 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 645 IPR047173 GO:0043539(InterPro)
Cone20ag1129 652 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1129 652 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Cone20ag1129 652 MobiDBLite consensus disorder prediction 353 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0623 Cone-Chr18:3194144 Cone20ag1129 Cone-Chr20:7711788 2.01E-251 dispersed
Cone18ag1363 Cone-Chr18:9363976 Cone20ag1129 Cone-Chr20:7711788 1.19E-184 dispersed
Cone20ag1129 Cone-Chr20:7711788 Cone8ag0549 Cone-Chr8:4082559 1.58E-154 dispersed
Cone11ag0941 Cone-Chr11:7685584 Cone20ag1129 Cone-Chr20:7711788 2.85E-248 wgd
Cone17ag0279 Cone-Chr17:1338830 Cone20ag1129 Cone-Chr20:7711788 0 wgd
Cone20ag1129 Cone-Chr20:7711788 Cone7ag1037 Cone-Chr7:7980858 3.45E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82566 PF00152 tRNA-synt_2 8.70E-66 CL0040 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1129 K08835 - cit:102627630 832.402