Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1132 ATGGGAGTATATCTCAGCTGCCCTAAGAGAGAGAAAGCATCTGGAGATGGCGAGAATGAGAGACTTCGATATGGCTTCTCCTCCATGCAAGGCTGGCGTGCAACGATGGAAGATGCTCATGCAGCTTTACTTGATTTGGACACTTCTACATCGTTTTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTGCAATGTTTTGTGCCAAGCATCTTCACCAACAGCTTCTCAGTCAAGAATCATATGCAGCAGGGGATCTAGGAATTTCATTACAGAAAGCCTTTCTCAGAATGGATGAGATGATGTGTGGACAACGGGGGTGGAGAGAATTGGCCATTTGGGGAGACACGATGGACAAGGTTTCTGGTATGATTGAAGGTATTATATGGTCTCCAAAGGGTAGCAGAGTTAATGAAAGCTTGGATGATTGGAATTCTGCGGAGGGACCTCATTCAGATTTTCGTGGACCAACTTCTGGATGCACAGCTTGTGTTGCAGTTATACGAAACAACCAAATTGTTGTGGCAAATGCTGGTGATTCACGCTGTGTTATATCCAGGAAGGGTCAGGCTTATAATCTGTCTAAAGATCACAAGCCTGATCTCGAGGCTGAGAAGGAAAGGATTCTGAAAGCTGGTGGTTTCATCCGCGTAGGACGTGTCAATGGAAGTTTAAACTTGGCCAGAGCTATTGGAGACATGGAATTCAAGCAGAATAAACAGTTACCCCCAGAGATGCAGATTATTACTGCCAATCCAGATGTGATCACTGTTGAGCTTTGTGATGATGATGAGTTTCTTGTCCTAGCTTGTGATGGGGTTTGGGACTGCATGTCAAGCCAACAACTAGTCGACTACGTACGGGAGAATTTGAAAACAGAAAGCAAGATTTCAGCGATTTGCGAGAAAGTGTTCGACAGGTGCTTGGCCCCAACAGTTGGCGGTGAGGGATGTGATAACATGACCATGATAATGGTTCTATTTAAGAAACCTGATTATTCAGAGACTAATGCTGAGGACAAGCCGTTATCATCCGAGCATAATAAAATTGCCAGCGTTTCTGGATAG 1068 44.57 MGVYLSCPKREKASGDGENERLRYGFSSMQGWRATMEDAHAALLDLDTSTSFFGVYDGHGGKAVAMFCAKHLHQQLLSQESYAAGDLGISLQKAFLRMDEMMCGQRGWRELAIWGDTMDKVSGMIEGIIWSPKGSRVNESLDDWNSAEGPHSDFRGPTSGCTACVAVIRNNQIVVANAGDSRCVISRKGQAYNLSKDHKPDLEAEKERILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKQLPPEMQIITANPDVITVELCDDDEFLVLACDGVWDCMSSQQLVDYVRENLKTESKISAICEKVFDRCLAPTVGGEGCDNMTMIMVLFKKPDYSETNAEDKPLSSEHNKIASVSG 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7728195 7731352 + Conep20aG0117300.1 Cone20ag1132 461036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1132 355 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Cone20ag1132 355 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Cone20ag1132 355 PANTHER PROTEIN PHOSPHATASE 2C 20 328 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone20ag1132 355 SMART PP2C_4 13 326 IPR001932 -
Cone20ag1132 355 CDD PP2Cc 23 328 IPR001932 -
Cone20ag1132 355 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Cone20ag1132 355 Gene3D - 1 329 IPR036457 -
Cone20ag1132 355 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Cone20ag1132 355 Pfam Protein phosphatase 2C 156 313 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1132 Cone-Chr20:7728195 Cone8ag0907 Cone-Chr8:8797371 2.61E-39 dispersed
Cone20ag1132 Cone-Chr20:7728195 Cone4ag1741 Cone-Chr4:12829972 4.58E-170 wgd
Cone20ag1132 Cone-Chr20:7728195 Cone7ag1661 Cone-Chr7:11158108 1.41E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1132 K17499 - csv:101214132 579.711