Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1136 ATGTTTGATTGTGGATACAAATCACAGTATATAGGTGGCCAGAGGGAGAAATTTGTAAGGTTGGATTCTATGTCTTCTGGTACCGGTGGGATGAAGAAAATCCGATTTAATGTCGACGGGTTACCCTTTTCTGGTCGTTCAAAGAAAAACCCATCAAAATCCTTTAGAAAAGGAGTACAGATGGGATCAAATGGAATAAGAACATTTGGTCGGTCATTAAGGTCGGGCGTTACCCGTGCAGTTTTTCCGGAAGATCTTAAGGTTGCAGATAAAAGGATATTTGACCCTCAAGACAAATCACTCCTTACCTGGACTAGACTATTTGTCCTATGTTGTATTTTCTCAGTCTCTATAGATCCTTTGTTTTTCTACCTTCCTGTCATAGATGGAGGATTAAATTGTCTTGGAATTGATACACAGCTAGCCATCCTAACTACTACCGTGAGGACTATAATAGATACTTTCTACCTTTTCCGAATTGTCCTTCAGTTCCGCACTGCTTATATTGCTCCATCATCTCGAGTTTTTGGACGAGGTGAACTTGTGATAGATCCTGGTCAGATAGCCCGTCGATATTTAACGCATTATTTCATAGTTGACCTGATGTCCATCCTACCTCTTCCACAGTTTGTGGTGTGGAGATTCTTTAAAAGATCAAAAGGGTCAGAGGTTTTTACTACAAAGCAGGCACTACTAAAGATTGTCTTACTCCAATATATTCCCAGATTCATCCGCTTTATACCTTTAAACACTGAGCTTAAGAAAACAGCCGGTGTTTTTGCTGAAAGTGCTTTTGTTGGAGCTGCTTACTATTTGCTTCTATATATGCTTGCTAGTCATATAACAGGGTCTTTCTGGTACTTACTTGCTGTAGAACGGAAGGGTTCATGTTGGAGAAAAGTTTGTGATATTAATGATCAATGTAAGCTTAATTTTCTCTACTGTGATCACTGGCATTCGCTCGATTATAATGAATGGAAAGGTATGAGCAAAAGAGTTTTTAGAGAAGAGTGTGATCCCAACAGCAATGACCCCAAATTTAACTTTGGGATTTACACTCAGGCTATTGCATCTGGCGTTGTCCAATCCTCTACATTTTTCTCCAAATTCTGCTACTGCTTCTGGTGGGGACTCCAAAATTTGAGCACACTCGGTCAGGGGCTTCAAACCAGTCTGTATCCTGGAGAAGTTGTATTTTCTATATGTATTGGAATTTTTGGGCTCATCCTCTTTGCACTTCTTATAGGAAACATGCAAACCTATCTTCAATCTCTTACCGTCCGTCTCGAGGAGATGAGGATCAAAAGACGCGATTCTGAGCAGTGGATGCATCACCGTTTACTCCCACAAGATCTTAGAGAAAGAGTCAGGCGCTACGACCAATACAAATGGTTAGAAACCAGAGGAGTAGACGAAGAGGGTCTAGTCCAAAACCTTCCTAAAGATTTAAGGAGGGATATCAAACGACACCTCTGTCTCAATTTGGTCAGAAGGGTGCCTCTGTTTGCCAATATGGACGAGCGTTTACTGGACGCTATCTGTGAACGCTTGAAGCCAACTTTATACACAGAAAGTACTTATATAGTAAGAGAAGGGGACCCAGTAAACGAAATGCTCTTCATCATACGTGGCAGGTTAGAGAGTGTAACTACAGATGGAGGAAGAAGCGGTTTCTTCAACCGCGGTTTACTGAAAGAAGGAGATTTCTGCGGAGAAGAGTTGTTAACATGGGCTTTAGATCCCAAAGCGGGGTCGAACTTACCGTCTTCAACTAGAACCGTAAACGCTATAACGGAAGTGGAAGCGTTTGCGTTAGAAGCAGAGGAGCTTAAGTTTGTGGCGGGTCAGTTCAGGCGGCTGCATAGCAGAGCGGTTCAACATACATTCCGGTTTTATTCACAGCAGTGGAGGACATGGGCTGCTTGCTTTATTCAGGCGACGTGGAGGAGATATTTGAGGAGGAAGGCGGCGGAGCAGAGTAGGAGAGAGGAGGAGGAAGAGGCGGAGAGAGAAGGCGACGATAGCGGCGGTGGCGGACCTGGCGGTAATAGTGGTAGAGGGGGTGAGGATTATAGTGATGAGAGTGCATTGATTTTGAGTAAGTCAAGTTCAAGGAGACTGGGTGCGACCATTCTGGCGTCGAGGTTTGCGGCCAGTGCTCTTCGTGGTAGGAAGAGGCGTAGTACCAGTTCGGTATCGTTGGTTAAGCCGGCTAAGCCCACCGAGCCGGATTTTTCTGCAGAGTAA 2247 43.93 MFDCGYKSQYIGGQREKFVRLDSMSSGTGGMKKIRFNVDGLPFSGRSKKNPSKSFRKGVQMGSNGIRTFGRSLRSGVTRAVFPEDLKVADKRIFDPQDKSLLTWTRLFVLCCIFSVSIDPLFFYLPVIDGGLNCLGIDTQLAILTTTVRTIIDTFYLFRIVLQFRTAYIAPSSRVFGRGELVIDPGQIARRYLTHYFIVDLMSILPLPQFVVWRFFKRSKGSEVFTTKQALLKIVLLQYIPRFIRFIPLNTELKKTAGVFAESAFVGAAYYLLLYMLASHITGSFWYLLAVERKGSCWRKVCDINDQCKLNFLYCDHWHSLDYNEWKGMSKRVFREECDPNSNDPKFNFGIYTQAIASGVVQSSTFFSKFCYCFWWGLQNLSTLGQGLQTSLYPGEVVFSICIGIFGLILFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEEGLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVNAITEVEAFALEAEELKFVAGQFRRLHSRAVQHTFRFYSQQWRTWAACFIQATWRRYLRRKAAEQSRREEEEEAEREGDDSGGGGPGGNSGRGGEDYSDESALILSKSSSRRLGATILASRFAASALRGRKRRSTSSVSLVKPAKPTEPDFSAE 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7746875 7749776 + Conep20aG0117700.1 Cone20ag1136 461040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1136 748 SUPERFAMILY cAMP-binding domain-like 431 622 IPR018490 -
Cone20ag1136 748 SUPERFAMILY Voltage-gated potassium channels 96 423 - -
Cone20ag1136 748 Gene3D Helix hairpin bin 428 492 - -
Cone20ag1136 748 MobiDBLite consensus disorder prediction 659 695 - -
Cone20ag1136 748 Pfam Cyclic nucleotide-binding domain 522 611 IPR000595 -
Cone20ag1136 748 ProSiteProfiles IQ motif profile. 637 666 - -
Cone20ag1136 748 MobiDBLite consensus disorder prediction 719 748 - -
Cone20ag1136 748 FunFam Cyclic nucleotide-gated ion channel 1 428 492 - -
Cone20ag1136 748 PRINTS EAG/ELK/ERG potassium channel family signature 396 407 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone20ag1136 748 PRINTS EAG/ELK/ERG potassium channel family signature 464 471 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone20ag1136 748 PRINTS EAG/ELK/ERG potassium channel family signature 414 423 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone20ag1136 748 PRINTS EAG/ELK/ERG potassium channel family signature 277 287 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone20ag1136 748 PRINTS EAG/ELK/ERG potassium channel family signature 160 169 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone20ag1136 748 Pfam Ion transport protein 104 428 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1136 748 Gene3D - 103 426 - -
Cone20ag1136 748 ProSiteProfiles cAMP/cGMP binding motif profile. 501 631 IPR000595 -
Cone20ag1136 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 75 730 - -
Cone20ag1136 748 CDD CAP_ED 501 632 IPR000595 -
Cone20ag1136 748 SMART cnmp_10 501 632 IPR000595 -
Cone20ag1136 748 Coils Coil 654 674 - -
Cone20ag1136 748 Gene3D Jelly Rolls 499 619 IPR014710 -
Cone20ag1136 748 FunFam Cyclic nucleotide-gated ion channel 1 499 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1136 Cone-Chr20:7746875 Cone2ag0580 Cone-Chr2:3369644 0 dispersed
Cone17ag0275 Cone-Chr17:1299404 Cone20ag1136 Cone-Chr20:7746875 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1136 K05391 - csv:101221166 1073.54