Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1150 ATGGAGAATGAGGATGTTTCATCAGCACCTTCTACACCAGCCACACCAGGCACACCTGGTGCTCCTCTTTTTAGCAGTAGTTTCAAGCTAAGTTCTGCCATTAATGGCAGAAAATCACTCCTCAAAAGCAGCTGCAAATGCTTTACTGCTAATGTTGTTGAGGAATGGGCCATGGAAGAAGGAACTTTGCCTAATAAACTCTCTTGCTCTTTCCCACCAACTCCTATATCACTTGCACGAAAGGTGGGAGCTGAATTTATAGGCACACTTATACTGATTTTTGCTGGGACAGCTACTGCTATAGTGAACCAAAAGACACAAGGATCTGAGACACTCATTGGTCTGGCTGGATCAACAGGTTTAGCTGTTATGATTGTGATTCTATCAACTGGACACATTTCTGGGGCCCACCTTAACCCTGCTGTCACCATTGCTTTTGCTGCCTTAAGGCACTTCCCATGGAAACATGTGCCGGTTTATATAGGAGCCCAAACAGTAGCATCTATATGTGCTGCATTTGCACTAAAGGGGATATTTCACCCTATAATGGGTGGAGGAGTTACAGTTCCTTCAGGTGGATTTGGCCAAGCTTTTGCTCTTGAATTCATAATCAGCTTCAACCTCATGTTTGTTGTTACTGCTGTCGCTACCGACACTAGAGCTGTAGGAGAATTGGCCGGAATCGCAGTCGGAGCTACTGTCATGCTCAACATACTCATCGCCGGGGAAACAACAGGAGGATCAATGAATCCTGTAAGAACACTAGGACCAGCCTTGGCAACAAACAATTTCAAAGGGTTATGGGTATATCTTACAGCCCCCATTCTTGGCGCACTTTGTGGGGCAGGAACATATTCTGCTGTTAAGCTGCCCGAGAAAGAGGAAGACGGCGAAAAGTGA 900 45.67 MENEDVSSAPSTPATPGTPGAPLFSSSFKLSSAINGRKSLLKSSCKCFTANVVEEWAMEEGTLPNKLSCSFPPTPISLARKVGAEFIGTLILIFAGTATAIVNQKTQGSETLIGLAGSTGLAVMIVILSTGHISGAHLNPAVTIAFAALRHFPWKHVPVYIGAQTVASICAAFALKGIFHPIMGGGVTVPSGGFGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGETTGGSMNPVRTLGPALATNNFKGLWVYLTAPILGALCGAGTYSAVKLPEKEEDGEK 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7806133 7808052 + Conep20aG0119100.1 Cone20ag1150 461054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1150 299 Gene3D Glycerol uptake facilitator protein. 66 298 IPR023271 -
Cone20ag1150 299 Pfam Major intrinsic protein 77 285 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 CDD MIP 80 285 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 268 288 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 156 175 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 231 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 80 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 119 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PRINTS Major intrinsic protein family signature 200 218 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1150 299 PANTHER AQUAPORIN NIP2-1 69 293 IPR034294 -
Cone20ag1150 299 SUPERFAMILY Aquaporin-like 76 294 IPR023271 -
Cone20ag1150 299 ProSitePatterns MIP family signature. 137 145 IPR022357 -
Cone20ag1150 299 FunFam Aquaporin NIP2-1 68 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1005 Cone-Chr11:8023306 Cone20ag1150 Cone-Chr20:7806133 1.60E-125 dispersed
Cone18ag0574 Cone-Chr18:2847073 Cone20ag1150 Cone-Chr20:7806133 2.41E-117 dispersed
Cone20ag1150 Cone-Chr20:7806133 Cone4ag0541 Cone-Chr4:2431182 4.50E-75 dispersed
Cone15ag0957 Cone-Chr15:7598646 Cone20ag1150 Cone-Chr20:7806133 2.11E-93 transposed
Cone8ag0521 Cone-Chr8:3729290 Cone20ag1150 Cone-Chr20:7806133 4.30E-104 transposed
Cone17ag0266 Cone-Chr17:1262125 Cone20ag1150 Cone-Chr20:7806133 4.89E-189 wgd
Cone2ag0195 Cone-Chr2:1031566 Cone20ag1150 Cone-Chr20:7806133 5.85E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1150 K09874 - cit:102629705 466.463