Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1182 ATGGCTTTTTGCTCCATGTTTTGCTTCGGAAGCGGTTCGGATCGGAAAGACAGAGGGAAGAAGCAGCAAACATGGAGGGTGTTTACGTTAAAGGAACTACACCTCGCTACGAACAATTTCAATTATGATAACAAGCTCGGAGAGGGCGGATTTGGTAGTGTCTATTGGGGTCAGCTTTGGGATGGATCACAGATTGCAGTCAAGAGGTTGAAATCTTGGAGCAGCAAAGCTGAACTAGAGTTCGCTGTGGAAGTCGAAATACTTGCTAGAGTTCGGCACAAGAACCTACTAAGTCTACGTGGCTATTGTGCTGAAGGTCAAGAACGTTTGATCGTATACGAGTTCATGCCCAATTTGAGTTTACTTTCCCATCTTCATGGCCTGCATTCTGCAGAGTGCCTTCTCAATTGGAACCGCCGGATGAAAATCGCCATTGGGTCTGCAGAGGGAATTTCTTATCTTCACCACCAAGCAACACCACATATAATTCACAGAGATATAAAAGCAAGTAATGTGTTGCTAGATTCGGAATTCCAGGCTCGGGTGGCTGACTTCGGGTTTGCAAAGCTGGTCCCAGACGGTGCGACCCATGTGACTACTAATGTTAAGGGCACTCTAGGTTACCTTGCTCCAGAATATGCTATGTTAGGGAAAGCATCTGAGAGCTGTGATGTTTACAGCTTTGGAATCCTCTTGCTCGAGCTTGCAAGTGGGAAGAGACCACTGGAGAAAACGAGTGCAGGGGCAAAACGGACTATTACAGATTGGGCCTTGCCATTGGCTTGTGAGAGGAAGTTTGGTGAATTAGTTGATCCGAAGTTGGGTGGAGATTATGTAGAGGAAGAGCTGAGAAGAGTTGTGCTCATTGCATTAGTTTGTGCTGATTCTCGGCCTGAGAAAAGACCTACTATGATCGAGGTGGTGGAGCTTCTGAAGGGAGAGGCCAGAGAGAAATTTGCGAAATTGGAAGAGAATGAGATATTTAAAAATCCAGAAGTGGTCGAGTATCATAATAATGAGGTTTCTGTTACTGAAGATAGCTCGGATTTTATCTCAGCTTCAAAAGACGAGTTGTAA 1077 45.22 MAFCSMFCFGSGSDRKDRGKKQQTWRVFTLKELHLATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKSWSSKAELEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYEFMPNLSLLSHLHGLHSAECLLNWNRRMKIAIGSAEGISYLHHQATPHIIHRDIKASNVLLDSEFQARVADFGFAKLVPDGATHVTTNVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKRPLEKTSAGAKRTITDWALPLACERKFGELVDPKLGGDYVEEELRRVVLIALVCADSRPEKRPTMIEVVELLKGEAREKFAKLEENEIFKNPEVVEYHNNEVSVTEDSSDFISASKDEL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7952997 7955986 - Conep20aG0122300.1 Cone20ag1182 461086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1182 358 PANTHER OS01G0750732 PROTEIN 22 344 IPR050885 -
Cone20ag1182 358 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Cone20ag1182 358 PIRSF ILK 10 326 - -
Cone20ag1182 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1182 358 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1182 358 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Cone20ag1182 358 Coils Coil 305 325 - -
Cone20ag1182 358 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Cone20ag1182 358 Pfam Protein tyrosine and serine/threonine kinase 42 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1182 358 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Cone20ag1182 358 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Cone20ag1182 358 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Cone20ag1182 358 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0167 Cone-Chr11:820379 Cone20ag1182 Cone-Chr20:7952997 3.38E-104 dispersed
Cone18ag1318 Cone-Chr18:9141697 Cone20ag1182 Cone-Chr20:7952997 3.92E-135 dispersed
Cone20ag1182 Cone-Chr20:7952997 Cone5ag0826 Cone-Chr5:3543043 3.70E-137 dispersed
Cone16ag0635 Cone-Chr16:7938966 Cone20ag1182 Cone-Chr20:7952997 3.34E-184 wgd
Cone17ag0230 Cone-Chr17:1080661 Cone20ag1182 Cone-Chr20:7952997 3.12E-236 wgd
Cone20ag1182 Cone-Chr20:7952997 Cone4ag0651 Cone-Chr4:3075648 1.01E-62 wgd
Cone20ag1182 Cone-Chr20:7952997 Cone7ag1042 Cone-Chr7:8010250 9.34E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82569 PF06047 Nkap_C 3.50E-48 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1182 - - - 0.0