Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag1192 | ATGGCGACGAGCAATGTGCTTCATGGTACTCTTCACGTAACCGTCAATGAAGTGGATTCCCTTCCCGGTGGTGGCAGTGGCGGCGGCGGACCTGGCTTCCTTCGCAAGCTTAAGGAAAACATTGAGGAGAGCATTGGCGTGGGAAAAGGAGTCAGCAAAATATATACAACTATCAGTCTAGACAAGGCCAGAGTCGGAAGAACAAGAAGGATAGAAGATGAACCCTTTAGCCCCAAATGGTATGAATCTTTTCACATTTACTGTGCCCACTGGGCTTCAAATGTTATCTTCACAATCAAAGATGATAGCGGTATAGGAGCAACTGTAATAGGAGACGCATATGTTCCTGTTATAGAACTCTTGCGTGGTGAAGAAGTAGATAAATGGGTTGAAATCTGTGACGAAGACAGAAACCCTATCAATGATGGAGGCTCTAAGATTCACATCAATCTTAGATATTTTGACGTGAACAAAGACCCTTCTTGGGGTCACGGTATTAGGAGCCCTAAATATCCAGGGGTACCCTATACTTTCTTTCCTCAAAGAACTGGTTGTAAGGTTTCCTTATATCAAGATGCTCATGTCCCAGAAAACTTTATACCTCAAATCCCTCTTTCTGGAGGACAAAACTATGAGCCTCATAGATGTTGGGAAGATATCTTTGACGCGATATCAAATGCTCGGCACTTGATTTACATTACAGGCTGGTCTGTCTACACTGAAGTCATGTTGATACGGGACTCCAAGAGGCAAAAGCAAGGTGGAAGTGTGAAGTTGGGTGAGCTTCTATTGAAAAAGGCAAATGAAGGTGTTAAAGTTCTTATGCTTGTTTGGGATGATAGAACCTCTGTTGGTTTATTGAAGAAGGATGGATTAATGGCAACCCATGATGAAGAAACTGAGAAATTCTTTGAAAACACTGATGTGAATTGCGTGTTATGCCCTCGTAACCCAGATGATGGAAACAGCTTTGTTCAGGATCTTCAAATTTCCACCATGTTCACTCATCATCAGAAGATTGTAGTAGTCGACAGTGCGCTAATGCCAAATGGAGGAGATTCAAGGAGAAGGAGAATCGTGAGCTTTGTTGGGGGTCTTGATCTTTGTGATGGTAGATATGATACAGCTTTTCATTCGCTTTTCAGGACTTTAAACTCTACACATGCTAGTGATTTTCACCAGCCAAACTATGCAGATGCTGCAATAGAAAAAGGCGGGCCTAGAGAGCCTTGGCATGACATTCACTCTAGGCTTGAAGGTCCTATTGCTTGGGATGTCTTGTTCAACTTTGAACAGAGATGGAGAAAACAAGGCGGTAAAGATGTGCTTGTAAAGATCAGAGAGCTTGATGATATAATCATTCCGCCTTCTCCAGTTATGTACCCAAACGACCCCGAAACTTGGAACGTCCAGTTATTCCGGTCAATTGATGGTGGGGCTGCCTTTGGCTTTCCTCAAACACCAGAAGAAGCTGCTAGAGCAGGGCTAGTAAGTGGGAAGAACAATATCATTGATAGAGGCATTCAAGATGCTTATATTCACGCAATTAGGCGAGCAAGGAACTTTATCTACATCGAAAACCAGTATTTCCTCGGAAGCTCTTTCGGTTGGGAAAATGATCACAACTTCAAACCCGAAGACGTGGGCGCCTTACATGTCATCCCAAAGGAACTTTCTCTTAAGATCGTCAGTAAGATCAAAGCAAGAGAGAGGTTTGTTGTTTATGTTGTGGTTCCAATGTGGCCGGAAGGGATTCCAGAGAGTGGCTCAGTCCAAGCTATATTAGATTGGCAGAGGAGAACAATGGAGATGATGTATAAAGATGTGGTTCAAGCTCTTGTTGCTAATGGCATTGATGAAGATCCCAGAAACTACTTAACATTTTTCTGCCTTGGAAACAGAGAAATAAAAAACCCAGGCGAATATCAACCCACTGAGGAACCGCCTGTGGATTCAATGTATTACAGCGCGCAGCAACACAGACGGTTTATGATTTATGTTCATACCAAAATGATGATAGTTGATGATGAGTACATTATAATCGGATCGGCAAACATAAACCAGAGGTCAATGGATGGGGCTAGGGACTCAGAGATAGCCATGGGAGGATACCAACCATATCATCTATCGAACCATGAGCCAGCTAGAGGGCAGGTCCATGGGTTCCGAATGGCTCTGTGGTTTGAGCATTTGGGTATGGTTCATGAGTCGTTTAATCGGCCTGAGAGCGTGGAGTGCGTGAGCAGAGTGAACAAAATTGCTAAGCAGTATTGGGATTTATACTCAGGTGAACAGCTTGAACACGACCTTCCTGGTCATTTGCTGCGTTACCCTGTTCAAATTGAAACCGATGGAAGAATTACTCCGCTTCCTGGATTCGAATTCTTCCCTGATACTAAAGCTCGTATTGTTGGTGACAAGTCTGAGATGCTCCCTCCTATTCTTACAACTTAA | 2454 | 43.48 | MATSNVLHGTLHVTVNEVDSLPGGGSGGGGPGFLRKLKENIEESIGVGKGVSKIYTTISLDKARVGRTRRIEDEPFSPKWYESFHIYCAHWASNVIFTIKDDSGIGATVIGDAYVPVIELLRGEEVDKWVEICDEDRNPINDGGSKIHINLRYFDVNKDPSWGHGIRSPKYPGVPYTFFPQRTGCKVSLYQDAHVPENFIPQIPLSGGQNYEPHRCWEDIFDAISNARHLIYITGWSVYTEVMLIRDSKRQKQGGSVKLGELLLKKANEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETEKFFENTDVNCVLCPRNPDDGNSFVQDLQISTMFTHHQKIVVVDSALMPNGGDSRRRRIVSFVGGLDLCDGRYDTAFHSLFRTLNSTHASDFHQPNYADAAIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVKIRELDDIIIPPSPVMYPNDPETWNVQLFRSIDGGAAFGFPQTPEEAARAGLVSGKNNIIDRGIQDAYIHAIRRARNFIYIENQYFLGSSFGWENDHNFKPEDVGALHVIPKELSLKIVSKIKARERFVVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVVQALVANGIDEDPRNYLTFFCLGNREIKNPGEYQPTEEPPVDSMYYSAQQHRRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSNHEPARGQVHGFRMALWFEHLGMVHESFNRPESVECVSRVNKIAKQYWDLYSGEQLEHDLPGHLLRYPVQIETDGRITPLPGFEFFPDTKARIVGDKSEMLPPILTT | 817 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 7989422 | 7992482 | - | Conep20aG0123300.1 | Cone20ag1192 | 461096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag1192 | 817 | Pfam | Phospholipase D C terminal | 736 | 806 | IPR024632 | - | |
Cone20ag1192 | 817 | Pfam | Phospholipase D Active site motif | 665 | 690 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | Pfam | Phospholipase D Active site motif | 333 | 372 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | FunFam | Phospholipase D delta | 207 | 452 | - | - | |
Cone20ag1192 | 817 | ProSiteProfiles | C2 domain profile. | 1 | 130 | IPR000008 | - | |
Cone20ag1192 | 817 | SUPERFAMILY | Phospholipase D/nuclease | 160 | 444 | - | - | |
Cone20ag1192 | 817 | SMART | C2_3c | 10 | 129 | IPR000008 | - | |
Cone20ag1192 | 817 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 663 | 690 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | SMART | pld_4 | 663 | 690 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | SMART | pld_4 | 332 | 372 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | FunFam | Phospholipase D | 475 | 709 | - | - | |
Cone20ag1192 | 817 | CDD | C2_plant_PLD | 6 | 154 | - | - | |
Cone20ag1192 | 817 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 156 | IPR035892 | - | |
Cone20ag1192 | 817 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 332 | 372 | IPR001736 | GO:0003824(InterPro) | |
Cone20ag1192 | 817 | SUPERFAMILY | Phospholipase D/nuclease | 452 | 747 | - | - | |
Cone20ag1192 | 817 | Gene3D | Endonuclease Chain A | 481 | 707 | - | - | |
Cone20ag1192 | 817 | Gene3D | Endonuclease Chain A | 206 | 449 | - | - | |
Cone20ag1192 | 817 | PIRSF | PLD_plant | 1 | 817 | IPR011402 | GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro) | |
Cone20ag1192 | 817 | Pfam | C2 domain | 49 | 131 | IPR000008 | - | |
Cone20ag1192 | 817 | Gene3D | C2 domain | 2 | 157 | IPR035892 | - | |
Cone20ag1192 | 817 | PANTHER | PHOSPHOLIPASE D | 51 | 804 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag1192 | Cone-Chr20:7989422 | Cone9ag1632 | Cone-Chr9:11614724 | 1.45E-230 | dispersed | |
Cone16ag0649 | Cone-Chr16:7999422 | Cone20ag1192 | Cone-Chr20:7989422 | 0 | wgd | |
Cone17ag1023 | Cone-Chr17:7795482 | Cone20ag1192 | Cone-Chr20:7989422 | 0 | wgd | |
Cone2ag0364 | Cone-Chr2:1923354 | Cone20ag1192 | Cone-Chr20:7989422 | 0 | wgd | |
Cone20ag1192 | Cone-Chr20:7989422 | Cone7ag0634 | Cone-Chr7:3222065 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag1192 | K01115 | - | rcu:8282326 | 1339.32 |