Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1192 ATGGCGACGAGCAATGTGCTTCATGGTACTCTTCACGTAACCGTCAATGAAGTGGATTCCCTTCCCGGTGGTGGCAGTGGCGGCGGCGGACCTGGCTTCCTTCGCAAGCTTAAGGAAAACATTGAGGAGAGCATTGGCGTGGGAAAAGGAGTCAGCAAAATATATACAACTATCAGTCTAGACAAGGCCAGAGTCGGAAGAACAAGAAGGATAGAAGATGAACCCTTTAGCCCCAAATGGTATGAATCTTTTCACATTTACTGTGCCCACTGGGCTTCAAATGTTATCTTCACAATCAAAGATGATAGCGGTATAGGAGCAACTGTAATAGGAGACGCATATGTTCCTGTTATAGAACTCTTGCGTGGTGAAGAAGTAGATAAATGGGTTGAAATCTGTGACGAAGACAGAAACCCTATCAATGATGGAGGCTCTAAGATTCACATCAATCTTAGATATTTTGACGTGAACAAAGACCCTTCTTGGGGTCACGGTATTAGGAGCCCTAAATATCCAGGGGTACCCTATACTTTCTTTCCTCAAAGAACTGGTTGTAAGGTTTCCTTATATCAAGATGCTCATGTCCCAGAAAACTTTATACCTCAAATCCCTCTTTCTGGAGGACAAAACTATGAGCCTCATAGATGTTGGGAAGATATCTTTGACGCGATATCAAATGCTCGGCACTTGATTTACATTACAGGCTGGTCTGTCTACACTGAAGTCATGTTGATACGGGACTCCAAGAGGCAAAAGCAAGGTGGAAGTGTGAAGTTGGGTGAGCTTCTATTGAAAAAGGCAAATGAAGGTGTTAAAGTTCTTATGCTTGTTTGGGATGATAGAACCTCTGTTGGTTTATTGAAGAAGGATGGATTAATGGCAACCCATGATGAAGAAACTGAGAAATTCTTTGAAAACACTGATGTGAATTGCGTGTTATGCCCTCGTAACCCAGATGATGGAAACAGCTTTGTTCAGGATCTTCAAATTTCCACCATGTTCACTCATCATCAGAAGATTGTAGTAGTCGACAGTGCGCTAATGCCAAATGGAGGAGATTCAAGGAGAAGGAGAATCGTGAGCTTTGTTGGGGGTCTTGATCTTTGTGATGGTAGATATGATACAGCTTTTCATTCGCTTTTCAGGACTTTAAACTCTACACATGCTAGTGATTTTCACCAGCCAAACTATGCAGATGCTGCAATAGAAAAAGGCGGGCCTAGAGAGCCTTGGCATGACATTCACTCTAGGCTTGAAGGTCCTATTGCTTGGGATGTCTTGTTCAACTTTGAACAGAGATGGAGAAAACAAGGCGGTAAAGATGTGCTTGTAAAGATCAGAGAGCTTGATGATATAATCATTCCGCCTTCTCCAGTTATGTACCCAAACGACCCCGAAACTTGGAACGTCCAGTTATTCCGGTCAATTGATGGTGGGGCTGCCTTTGGCTTTCCTCAAACACCAGAAGAAGCTGCTAGAGCAGGGCTAGTAAGTGGGAAGAACAATATCATTGATAGAGGCATTCAAGATGCTTATATTCACGCAATTAGGCGAGCAAGGAACTTTATCTACATCGAAAACCAGTATTTCCTCGGAAGCTCTTTCGGTTGGGAAAATGATCACAACTTCAAACCCGAAGACGTGGGCGCCTTACATGTCATCCCAAAGGAACTTTCTCTTAAGATCGTCAGTAAGATCAAAGCAAGAGAGAGGTTTGTTGTTTATGTTGTGGTTCCAATGTGGCCGGAAGGGATTCCAGAGAGTGGCTCAGTCCAAGCTATATTAGATTGGCAGAGGAGAACAATGGAGATGATGTATAAAGATGTGGTTCAAGCTCTTGTTGCTAATGGCATTGATGAAGATCCCAGAAACTACTTAACATTTTTCTGCCTTGGAAACAGAGAAATAAAAAACCCAGGCGAATATCAACCCACTGAGGAACCGCCTGTGGATTCAATGTATTACAGCGCGCAGCAACACAGACGGTTTATGATTTATGTTCATACCAAAATGATGATAGTTGATGATGAGTACATTATAATCGGATCGGCAAACATAAACCAGAGGTCAATGGATGGGGCTAGGGACTCAGAGATAGCCATGGGAGGATACCAACCATATCATCTATCGAACCATGAGCCAGCTAGAGGGCAGGTCCATGGGTTCCGAATGGCTCTGTGGTTTGAGCATTTGGGTATGGTTCATGAGTCGTTTAATCGGCCTGAGAGCGTGGAGTGCGTGAGCAGAGTGAACAAAATTGCTAAGCAGTATTGGGATTTATACTCAGGTGAACAGCTTGAACACGACCTTCCTGGTCATTTGCTGCGTTACCCTGTTCAAATTGAAACCGATGGAAGAATTACTCCGCTTCCTGGATTCGAATTCTTCCCTGATACTAAAGCTCGTATTGTTGGTGACAAGTCTGAGATGCTCCCTCCTATTCTTACAACTTAA 2454 43.48 MATSNVLHGTLHVTVNEVDSLPGGGSGGGGPGFLRKLKENIEESIGVGKGVSKIYTTISLDKARVGRTRRIEDEPFSPKWYESFHIYCAHWASNVIFTIKDDSGIGATVIGDAYVPVIELLRGEEVDKWVEICDEDRNPINDGGSKIHINLRYFDVNKDPSWGHGIRSPKYPGVPYTFFPQRTGCKVSLYQDAHVPENFIPQIPLSGGQNYEPHRCWEDIFDAISNARHLIYITGWSVYTEVMLIRDSKRQKQGGSVKLGELLLKKANEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETEKFFENTDVNCVLCPRNPDDGNSFVQDLQISTMFTHHQKIVVVDSALMPNGGDSRRRRIVSFVGGLDLCDGRYDTAFHSLFRTLNSTHASDFHQPNYADAAIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVKIRELDDIIIPPSPVMYPNDPETWNVQLFRSIDGGAAFGFPQTPEEAARAGLVSGKNNIIDRGIQDAYIHAIRRARNFIYIENQYFLGSSFGWENDHNFKPEDVGALHVIPKELSLKIVSKIKARERFVVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVVQALVANGIDEDPRNYLTFFCLGNREIKNPGEYQPTEEPPVDSMYYSAQQHRRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSNHEPARGQVHGFRMALWFEHLGMVHESFNRPESVECVSRVNKIAKQYWDLYSGEQLEHDLPGHLLRYPVQIETDGRITPLPGFEFFPDTKARIVGDKSEMLPPILTT 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7989422 7992482 - Conep20aG0123300.1 Cone20ag1192 461096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1192 817 Pfam Phospholipase D C terminal 736 806 IPR024632 -
Cone20ag1192 817 Pfam Phospholipase D Active site motif 665 690 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 Pfam Phospholipase D Active site motif 333 372 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 FunFam Phospholipase D delta 207 452 - -
Cone20ag1192 817 ProSiteProfiles C2 domain profile. 1 130 IPR000008 -
Cone20ag1192 817 SUPERFAMILY Phospholipase D/nuclease 160 444 - -
Cone20ag1192 817 SMART C2_3c 10 129 IPR000008 -
Cone20ag1192 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 663 690 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 SMART pld_4 663 690 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 SMART pld_4 332 372 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 FunFam Phospholipase D 475 709 - -
Cone20ag1192 817 CDD C2_plant_PLD 6 154 - -
Cone20ag1192 817 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 156 IPR035892 -
Cone20ag1192 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 372 IPR001736 GO:0003824(InterPro)
Cone20ag1192 817 SUPERFAMILY Phospholipase D/nuclease 452 747 - -
Cone20ag1192 817 Gene3D Endonuclease Chain A 481 707 - -
Cone20ag1192 817 Gene3D Endonuclease Chain A 206 449 - -
Cone20ag1192 817 PIRSF PLD_plant 1 817 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cone20ag1192 817 Pfam C2 domain 49 131 IPR000008 -
Cone20ag1192 817 Gene3D C2 domain 2 157 IPR035892 -
Cone20ag1192 817 PANTHER PHOSPHOLIPASE D 51 804 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1192 Cone-Chr20:7989422 Cone9ag1632 Cone-Chr9:11614724 1.45E-230 dispersed
Cone16ag0649 Cone-Chr16:7999422 Cone20ag1192 Cone-Chr20:7989422 0 wgd
Cone17ag1023 Cone-Chr17:7795482 Cone20ag1192 Cone-Chr20:7989422 0 wgd
Cone2ag0364 Cone-Chr2:1923354 Cone20ag1192 Cone-Chr20:7989422 0 wgd
Cone20ag1192 Cone-Chr20:7989422 Cone7ag0634 Cone-Chr7:3222065 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1192 K01115 - rcu:8282326 1339.32