Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1212 ATGAGAGGAAGAGAAAATACAATCACTGCTAATGGTAGAATAACACGAGCTCGAGCTGCTGCATTTCGAGCCCAGGTCCATCCTACTACACAAGAACCTCCACAACAAAATCAAAAGCGGGTTTTACGAATTAATTCAAAAAGAGCAGCTTCTGATGAAAACAAAGCCAATTCTACGAGTAATGGTACATATCTGCAGTGTAAGAAAAGGGCAGTGTTTGAAGATGTAACAAATATTTGCTGTGAACCTTCATACAAGAAGTGCTTTAGTGCAGCTAAAATTCTGGTTACAAATAGAAAGCAGGCTAGGAAAGGTCGGGTCAAGAAACAGTTTGAAGCTGATTTGAAAGGAAAGTGTGGGCAAGTAGGAACAGTTAAAAGAGAAGTTGATGAGCACTCGATTGATTTGTTAGATCAAAACAAACCCCCTCAATTAGGTACTATAAAAAAGTGTGATAGGAACGATGACTGGCTTAGAATTCAAAAACCTCAAAATAGTTTGCAACCCCATGATTCAAGCATCAAAGAAGGAGAGGGCCGACCTGGGACCATATCAAGCAACCCTGACATAAAGGATATCGATTCAGACAACAGGGATCCTCAACTTTGCAGCCTCTATGCACCCGAAATCTATGCCAATTTACGTGCTAATGAGCTTTCTAGAAGGCCACATCTGAATTTCATGGAAACAATTCATCGAGATATAACACAAAATATGCGGAGAATTTTGGTCGATTGGCTCGTCGAGGTTTCAGAGGAATACAACTTGGTTTCAGACACGCTGTTCTTAACAGTATATCTGATAGATTGGTTTCTCTCTGAAAATTACATTGAAAGGCAAAAACTTCAGCTTTTGGGGATCACTTGCATGCTGATTTCTTCGAAATTTGAAGAAATCTGTGCACCACGCATTGAAGAGTTTTGTGTTATCACGGACAATACCTACACCAAAGAGGAGGTGTTGAAAATGGAAGATCATGTGTTGAAGCACATCGGCTTTCAACTATTTTCACCAACCGCAAAAGTTTTTCTCAGGAGATATCTTCTAGCTGCTCAAGCTTCATACAAGACCCCTAGTCTTGAATTGGAGTTCTTAGCCAATTATCTAGCCGAGCTCACATTAATGGACTACGGTTTCTTGAATTTCCTTCCTTCTATTGTTGCTGCCTCGGCTGTTTTCCTTTCCAAATGGACATTAGATCAATCTAATCACCCATGGAATGCAACACTAGAACACTATACTTCATACAAGGGATCGGATTTAAGAGCTGCAGTTCTTGCTTTACAAGATTTGCAGATGAACACGAGTAGTTGCCCTCTAGGTGCTATACGAAAAAAGTACCAGCAAGAAAAGTTTAAATCTGTTGCTGCTTTTTCTTCCCCAAAACTGATCGAGACGCTGTTCTAG 1407 40.23 MRGRENTITANGRITRARAAAFRAQVHPTTQEPPQQNQKRVLRINSKRAASDENKANSTSNGTYLQCKKRAVFEDVTNICCEPSYKKCFSAAKILVTNRKQARKGRVKKQFEADLKGKCGQVGTVKREVDEHSIDLLDQNKPPQLGTIKKCDRNDDWLRIQKPQNSLQPHDSSIKEGEGRPGTISSNPDIKDIDSDNRDPQLCSLYAPEIYANLRANELSRRPHLNFMETIHRDITQNMRRILVDWLVEVSEEYNLVSDTLFLTVYLIDWFLSENYIERQKLQLLGITCMLISSKFEEICAPRIEEFCVITDNTYTKEEVLKMEDHVLKHIGFQLFSPTAKVFLRRYLLAAQASYKTPSLELEFLANYLAELTLMDYGFLNFLPSIVAASAVFLSKWTLDQSNHPWNATLEHYTSYKGSDLRAAVLALQDLQMNTSSCPLGAIRKKYQQEKFKSVAAFSSPKLIETLF 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8063401 8066987 - Conep20aG0125300.1 Cone20ag1212 461116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1212 468 Gene3D - 209 457 - -
Cone20ag1212 468 SMART Cyclin_C_2 338 461 IPR004367 -
Cone20ag1212 468 Pfam Cyclin, C-terminal domain 338 460 IPR004367 -
Cone20ag1212 468 FunFam Mitotic cyclin 6 223 323 - -
Cone20ag1212 468 CDD CYCLIN_AtCycA-like_rpt2 338 452 - -
Cone20ag1212 468 FunFam Cyclin A1 325 457 - -
Cone20ag1212 468 PANTHER CYCLINS 189 449 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone20ag1212 468 SUPERFAMILY Cyclin-like 198 335 IPR036915 -
Cone20ag1212 468 Gene3D - 223 336 - -
Cone20ag1212 468 SUPERFAMILY Cyclin-like 338 463 IPR036915 -
Cone20ag1212 468 MobiDBLite consensus disorder prediction 161 196 - -
Cone20ag1212 468 SMART cyclin_7 245 329 IPR013763 -
Cone20ag1212 468 SMART cyclin_7 342 430 IPR013763 -
Cone20ag1212 468 Pfam Cyclin, N-terminal domain 209 335 IPR006671 -
Cone20ag1212 468 PIRSF Cyclin_A_B_D_E 1 467 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1212 Cone-Chr20:8063401 Cone4ag1423 Cone-Chr4:11351242 1.64E-92 dispersed
Cone17ag0200 Cone-Chr17:961179 Cone20ag1212 Cone-Chr20:8063401 1.07E-289 wgd
Cone20ag1212 Cone-Chr20:8063401 Cone4ag1826 Cone-Chr4:13192809 2.63E-132 wgd
Cone20ag1212 Cone-Chr20:8063401 Cone7ag1730 Cone-Chr7:11463130 1.87E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1212 K06627 - rcu:8271347 536.569