Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1225 ATGGGTGTGAATTCAAACAGAGTAGAAAGTGTTGAATGCCTTGAAACGTCAGTTAGAATCCCGGCGGAGTTAGAAGCAGAAACGGCATCGTCGGCTGAGATTCACAGAGTTTGCTTGCCTCCTAAGCAGACTACGCTCCAGAAACTGAAACACCGACTGTCGGAAGTGTTCTTCCCCGACGACCCGCTTCACCGATTCAAGAACCAGACTTGGGCCCAGAAACTCCTTCTGGGACTCCAGTTCTTCTTCCCCATCTTCCAGTGGGGCCCAGAATACAACCTCGGCCTCCTCAAATCCGACGTCATCTCCGGTCTCACTATTGCCAGCCTCGCCATCCCTCAAGGAATTAGCTATGCAAAGCTTGCGAATTTGCCGCCAATTGTGGGACTATATTCAAGCTTTGTGCCGCCATTGATCTACTCACTACTAGGAAGCTCGAGACATCTGGCAGTGGGCCCAGTTTCAATAGCTTCACTGGTCATGGGCTCAATGCTAAGCGAGAAGGTGTCTTTTACCGACGAACCGATTCTGTATCTGAAACTGGCCTTCAGTTCCACCTTCTTCGCCGGTGTTTTCCAGGCTTCTTTGGGTTTCTTAAGGTTGGGATTTGTTATCGATTTTCTGTCAAAGGCGACGCTGGTTGGCTTTATGGCTGGAGCAGCAGTCATTGTATCGTTGCAACAGCTTAAAGGGTTGCTTGGAATTGTTCATTTCACTACCAAAATGCAATTTGTCCCTGTTATGGCCTCTGTTTTTAGCCACAAAGATGAATGGTCGTGGCAAACCATTGTGTTAGGCTTCAGCTTCCTACTCTTTCTTCTGATCACGAGGCATATTAGCATGAGGAACCCAAAGCTGTTCTGGGTTTCAGCTGCAGCTCCATTAACATCAGTCATCCTCTCAACAATTCTCGTCTTTCTCTTAAGATCTAAAGTTCATGCAATCTCAGTTATTGGTCACTTGCCAAAAGGCCTTAATCCTCCATCTTCAAACATGCTCTTATTCACCGGCTCGCAACTCGCCCTCGCTATCAAAACCGGCATTGTTACCGGAATTCTCTCTCTCACCGAAGGAGTAGCAGTAGGAAGAACATTTGCGTCCTTAAAAAACTACCAAGTGGATGGAAACAAAGAAATGATGGCAATAGGCATAATGAACATGGCTGGTTCATGCTCTTCGTGCTTTGTCACGACAGGATCCTTTTCCCGATCAGCAGTGAACTACAATGCAGGGGCAAAAACAGCAATTTCGAACGTGGTTATGTCAGCTGCTGTGCTTGTAACTCTGCTCTTTCTAATGCCGTTATTCCGTTACACTCCAAATGTTATCTTAGCTGCCATCATTATAACGGCTGTGATTGGACTAATCGACTATCAAACCGCTTTTCGGTTCTGGAAAGTAGACAAGCTCGATTTCTTGGCTTGTCTTTGTTCTTTCTTTGGCGTTCTCTTCATTTCTGTTCCGCTCGGTCTTTCCATTGCAGTTGCAATCTCTGTTTTCAAGATTCTACTTCATGTTACGAGGCCGAATACGATGGCGTTGGGGAATATTCCCGGGACGAAAATATACCATAGCCTGATTCGATATAGGGAGGCGTTGAGGATTCCTTCCTTTCTCATTCTAGCTGTTGAGTCTCCTTTCTACTTTGCCAACTCAACTTACCTCCATGAAAGGATCTTAAGATGGGTTAGGGAGGAAGAAGAGTGGATTAAGGCAAACAACGAGAGTGCATTAAAATGTGTGATCTTGGATATGACAGCCGTGACAGCAATAGACACAAGTGGCTTAGAGACGATACGTGAAATTAGAAAGATACTAGACAAGAGATTACTTCAGCTTGTGCTGGCAAATCCGGTTGCAAGTGTGATGGAGAAACTTAACCAATCGAAAGTGTTGGAGTCGTTTGGGTTGAATAGTCTCTATCTTTCTGTTGGAGAAGCTGTGTCTGATATTTCTTCTTCATGGAAGCAACCTCAGCCTTAA 1983 45.49 MGVNSNRVESVECLETSVRIPAELEAETASSAEIHRVCLPPKQTTLQKLKHRLSEVFFPDDPLHRFKNQTWAQKLLLGLQFFFPIFQWGPEYNLGLLKSDVISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSLLGSSRHLAVGPVSIASLVMGSMLSEKVSFTDEPILYLKLAFSSTFFAGVFQASLGFLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTTKMQFVPVMASVFSHKDEWSWQTIVLGFSFLLFLLITRHISMRNPKLFWVSAAAPLTSVILSTILVFLLRSKVHAISVIGHLPKGLNPPSSNMLLFTGSQLALAIKTGIVTGILSLTEGVAVGRTFASLKNYQVDGNKEMMAIGIMNMAGSCSSCFVTTGSFSRSAVNYNAGAKTAISNVVMSAAVLVTLLFLMPLFRYTPNVILAAIIITAVIGLIDYQTAFRFWKVDKLDFLACLCSFFGVLFISVPLGLSIAVAISVFKILLHVTRPNTMALGNIPGTKIYHSLIRYREALRIPSFLILAVESPFYFANSTYLHERILRWVREEEEWIKANNESALKCVILDMTAVTAIDTSGLETIREIRKILDKRLLQLVLANPVASVMEKLNQSKVLESFGLNSLYLSVGEAVSDISSSWKQPQP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8126898 8129989 - Conep20aG0126600.1 Cone20ag1225 461129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1225 660 NCBIfam sulfate permease 84 647 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1225 660 Gene3D STAS domain 508 653 IPR036513 -
Cone20ag1225 660 ProSiteProfiles STAS domain profile. 528 651 IPR002645 -
Cone20ag1225 660 ProSitePatterns SLC26A transporters signature. 126 147 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cone20ag1225 660 PANTHER SULFATE TRANSPORTER 58 650 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1225 660 Pfam Sulfate permease family 97 476 IPR011547 GO:0016020(InterPro)
Cone20ag1225 660 Pfam STAS domain 530 647 IPR002645 -
Cone20ag1225 660 SUPERFAMILY SpoIIaa-like 533 649 IPR036513 -
Cone20ag1225 660 CDD STAS_SulP_like_sulfate_transporter 529 644 - -
Cone20ag1225 660 FunFam Sulfate transporter 31 508 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0932 Cone-Chr11:7614854 Cone20ag1225 Cone-Chr20:8126898 7.54E-255 dispersed
Cone18ag0634 Cone-Chr18:3289773 Cone20ag1225 Cone-Chr20:8126898 1.07E-254 dispersed
Cone19ag0765 Cone-Chr19:6216865 Cone20ag1225 Cone-Chr20:8126898 8.84E-281 dispersed
Cone20ag1225 Cone-Chr20:8126898 Cone4ag0266 Cone-Chr4:1188017 9.78E-234 dispersed
Cone16ag0684 Cone-Chr16:8169836 Cone20ag1225 Cone-Chr20:8126898 0 wgd
Cone17ag0187 Cone-Chr17:889603 Cone20ag1225 Cone-Chr20:8126898 0 wgd
Cone2ag0336 Cone-Chr2:1768979 Cone20ag1225 Cone-Chr20:8126898 3.04E-147 wgd
Cone20ag1225 Cone-Chr20:8126898 Cone7ag0674 Cone-Chr7:3672639 7.20E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1225 K17471 - cit:102621812 1063.14