Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1233 ATGGCCGGAATTATCTCCGGCTACCCACTCGACACTCTTCGAATCAAACAACAACAGAGCTCCAATTCTGGTTCCGCCATTTCCATCCTTCGCAAGGTCATCACCTCAGAAGGCCCTGCCGGTCTCTATAGAGGCATGGCCGCCCCCTTAGCTTCCGTCACCTTTCAGAACGCCATGGCGTTCCAGATCTACGCCGTCCTGTCACGAGCACTAGACCCATCGGTTCCGGCCTCAGAACCGCCGTCCCTTAGAGGAGTCGCTCTCGCCGGAGTCAGCACCGGGGCGATTCAAAGCCTCGTACTAACTCCCGTCGAGCTTATAAAAATCCGTCTCCAATTACAAACCTCAAATCCTAACCCGGCCGCAACAACTCATCTTCTACGGCCTCCGACGGGTCCACTGAACGTCTCAAAAGCCATCCTCAAAACAGAGGGATTAAAAGGTATGTACAGAGGCCTCGCCATAACCGTGCTACGAGACGCTCCTTCTCATGGCGTCTACTTCTCGACTTACGAGCTTATGAGAGAGATGCTTCATCCCGGTTGCCGGAAGAGCGGGGAGGAGAGCATGAGGACGATGCTTGTGGCGGGTGGGCTGGCCGGAGTGGCGAGCTGGGTTTGTTGTTACCCGTTGGACGTGGTGAAGACGAGGTTACAGGCCCAATCGGGATTTGGGCCGAGGAAGTATGTTGGGATTGTGGACTGTTTCAGGAAGAGTGTGAGGGAAGAGGGCTTTAGAGTTTTGTGGAGAGGTTTGGGAACTGCGGTTGCAAGAGCTTTTGTGGTTAATGGGGCCATTTTTACTGCGTATGAGACGGCTTTGAGGTGTATTTTTAGTAACGGCAATCTTCAAACGGAGAAATCAGAACTGATTTAA 876 53.08 MAGIISGYPLDTLRIKQQQSSNSGSAISILRKVITSEGPAGLYRGMAAPLASVTFQNAMAFQIYAVLSRALDPSVPASEPPSLRGVALAGVSTGAIQSLVLTPVELIKIRLQLQTSNPNPAATTHLLRPPTGPLNVSKAILKTEGLKGMYRGLAITVLRDAPSHGVYFSTYELMREMLHPGCRKSGEESMRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSGFGPRKYVGIVDCFRKSVREEGFRVLWRGLGTAVARAFVVNGAIFTAYETALRCIFSNGNLQTEKSELI 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8169237 8170973 + Conep20aG0127500.1 Cone20ag1233 461137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1233 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 188 276 IPR018108 -
Cone20ag1233 291 Pfam Mitochondrial carrier protein 5 71 IPR018108 -
Cone20ag1233 291 Pfam Mitochondrial carrier protein 189 277 IPR018108 -
Cone20ag1233 291 Pfam Mitochondrial carrier protein 87 179 IPR018108 -
Cone20ag1233 291 SUPERFAMILY Mitochondrial carrier 3 271 IPR023395 -
Cone20ag1233 291 PRINTS Mitochondrial carrier protein signature 152 172 IPR002067 GO:0055085(InterPro)
Cone20ag1233 291 PRINTS Mitochondrial carrier protein signature 249 267 IPR002067 GO:0055085(InterPro)
Cone20ag1233 291 PRINTS Mitochondrial carrier protein signature 99 113 IPR002067 GO:0055085(InterPro)
Cone20ag1233 291 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085(InterPro)
Cone20ag1233 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 70 IPR018108 -
Cone20ag1233 291 Gene3D Mitochondrial carrier domain 1 287 IPR023395 -
Cone20ag1233 291 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 277 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Cone20ag1233 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 177 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1233 Cone-Chr20:8169237 Cone5ag1055 Cone-Chr5:4648908 1.60E-22 dispersed
Cone20ag1233 Cone-Chr20:8169237 Cone20ag1234 Cone-Chr20:8171942 1.05E-136 tandem
Cone17ag0178 Cone-Chr17:849799 Cone20ag1233 Cone-Chr20:8169237 6.03E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1233 K15109 - rcu:8274512 428.713