Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1234 ATGGTTTTCCCGACCATCCAACAAGAGGGAGTGACAGATTTCTTGCCTCAGTTCCTTGCTAGCGGTTGGGGTAAGGAATTTGTGGCAGGTGGGTGTGGAGGCATTGCGGGAATAATCTCCGGCTATCCACTTGACACTCTTCGTATCAAACAACAGCACTCAAGTTCCGGTTCTGCCCTCACTATCCTTCGGAATGTAGTCACCACTGAAGGCCCCACCGCCCTCTATCGTGGCATGGCCGCCCCCCTGGCTTCCGTCGCTTTTCAGAATGCCATGGCATTCCAAATCTATGCAGTCCTTTCGCGAAAACTTGACCCACCTGTTTCGGCCAGTGATTCACCTTCTTTTAAAGGAGTAATTCTTGGAGGATTCGGAACTGGAGCTCTGCAGAGCTTTCTGCTAGCTCCAATAGAGCTTATAAAAATTCAACTCCAATTGCAGAGCACAGTAAATAAAGAACAAGTATCTCCAACAGGGCCTATCAATGTTGCCAAACGCATTCTGAAAGCAGAAGGGGTAAAGGGTTTATATCGAGGTTTTACCATAACTGTCCTCCGGGATGCTCCTGCCCATGGTGTCTACTTCTGGACATATGAGTATATGAGAGAGAAGCTTCACCCGGACAGTAGAAAGAACGGAGGGGAGACCTTGACAACAACTTTGGTAAGTGGAGGGTTGGCAGGGGTTGCTAGCTGGGTTTCCTGTTATCCATTAGATGTCGTGAAGACAAGATTGCAGGCTCAATCAAAGTCTTTTCCGAGAAAATATGATGGGATTGTTGATTGCTTTTGGAAGAGTGTTAGAGAAGAGGGGGCCAGAGTGCTTTGGAGAGGACTAGGAACAGCTGTGGCTAGGGCATTTGTGGTAAATGGTGCGATCTTTGCTGCCTACGAGACAGCTTTGAGGTGCATTAACACCGATGAAGGTCCTTAG 933 48.23 MVFPTIQQEGVTDFLPQFLASGWGKEFVAGGCGGIAGIISGYPLDTLRIKQQHSSSGSALTILRNVVTTEGPTALYRGMAAPLASVAFQNAMAFQIYAVLSRKLDPPVSASDSPSFKGVILGGFGTGALQSFLLAPIELIKIQLQLQSTVNKEQVSPTGPINVAKRILKAEGVKGLYRGFTITVLRDAPAHGVYFWTYEYMREKLHPDSRKNGGETLTTTLVSGGLAGVASWVSCYPLDVVKTRLQAQSKSFPRKYDGIVDCFWKSVREEGARVLWRGLGTAVARAFVVNGAIFAAYETALRCINTDEGP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8171942 8175440 + Conep20aG0127600.1 Cone20ag1234 461138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1234 310 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085(InterPro)
Cone20ag1234 310 PRINTS Mitochondrial carrier protein signature 26 39 IPR002067 GO:0055085(InterPro)
Cone20ag1234 310 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085(InterPro)
Cone20ag1234 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 114 204 IPR018108 -
Cone20ag1234 310 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 20 304 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Cone20ag1234 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 24 103 IPR018108 -
Cone20ag1234 310 SUPERFAMILY Mitochondrial carrier 24 298 IPR023395 -
Cone20ag1234 310 Pfam Mitochondrial carrier protein 23 103 IPR018108 -
Cone20ag1234 310 Pfam Mitochondrial carrier protein 216 305 IPR018108 -
Cone20ag1234 310 Pfam Mitochondrial carrier protein 119 206 IPR018108 -
Cone20ag1234 310 Gene3D Mitochondrial carrier domain 23 308 IPR023395 -
Cone20ag1234 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 303 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0017 Cone-Chr13:93461 Cone20ag1234 Cone-Chr20:8171942 9.56E-49 dispersed
Cone17ag0178 Cone-Chr17:849799 Cone20ag1234 Cone-Chr20:8171942 1.36E-182 dispersed
Cone19ag0016 Cone-Chr19:126050 Cone20ag1234 Cone-Chr20:8171942 3.53E-49 dispersed
Cone20ag1234 Cone-Chr20:8171942 Cone6ag0430 Cone-Chr6:2086342 7.41E-19 dispersed
Cone20ag1233 Cone-Chr20:8169237 Cone20ag1234 Cone-Chr20:8171942 1.05E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1234 K15109 - sly:101247830 422.55