Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1249 ATGGGCTTGAACATGTCGAACAAACAGAAACCGCCTTCTCTTACCAAAGACTTCTTCGCCGCCTCCCCTGCTCTCTCTCTCAGCCTTGCTGGGATTTTCCGTCATGCCGGAGAGGCGGCGGCTGCGGCGAACATGGAGGTGGAGGAAGGGGATGAGGGGAGTGGAGGAGGTGGAGGAGGAAAGGGAAGGAGAGAAGACAGTGCGCTCGAGATTAGCAGTGAGAATTCGGCAGGAGGGCTCGTGAGATCCAGATCAGATGATGATTTTGATGGAGAAGGAGACCAAGATGATGATGAGGACGGAGACAATAACAGTAATAAGAAGAAGAAGAGGAAAAAATATCACAGACACACTGCTGAGCAAATCAGAGAAATGGAAGCGTTGTTCAAAGAATCACCTCATCCAGATGAGAAGCAAAGGCAACAACTCAGCAAGAAACTAGGCCTTGCTCCTAGACAGGTCAAATTCTGGTTCCAAAATCGTCGAACCCAGATTAAGGCGATACAAGAACGACACGAAAACAGCTTGTTCAAAACAGAGATGGAGAAGTTAAGAGAGGAAAACAAAGGCATGAGAGAGATCATAAGCAAAGCATGTTGCCCCAACTGTGGCACTTCTACCCCTAGTAAAGACATTCCTCTCTTGACCTCAACCGAGGACCAACAACTCCGTATCGAAAATGCACGTCTCAAAGCCGAGGTGGAAAAACTTCGGGCAGCTATAGGAAAATATCTTCCGGGGACAACTTCTGGTAATTCTTCGTGCACGGCGGAAAACAATCCCGAAAACAGGACAACCTTAGATTTTTATACCGGGATCTTTGTCTTAGAGAAGCCAAAGATAATGGAGATAGTTAATCAAGCAATGGAGGAGCTGATCAAGATGGCTACTTCTAAAGAACCGCTTTGGGTTCGAAGCATTGAGACCGGACGAGAAATTCTGAACTATGATGTGTACACGAAAGAGTTTCCGGTTGAAAATTTGAGCAATGATGGACCGAAGAGATCGATTGAAGCCTCGAGAGAGACCAGTGTTGTGTTTATGGATCTTCCTCGGCTTGTTCACAGTTTCATGGATGTGAATCAATGGAAGGAGATGTTTCCATGTATGATCTCAAAGGCAGCTGCTGTTGATGTCATTTGCAATGGTGAAGGTGCCAACAAGAATGGTGCAGTTCAACTGATGTTTGCAGAGCTGCAAATGCTTACGCCAATGGTGCCAACAAGAGAGGTGTATTTCATCCGATTCGGCAAGCAACTTAGTCCCGAACAATGGGCAATTGTTGATGTTTCGATCGACAAAGTCGAAGATAATATCAACGCGTCATTGGTGAAATTTCGGAAACACCCCTCTGGTTGCATCATTGAGGACAAGTCAAATGGCCACTGCAAGGTGATTTGGGTGGAGCACTTAGAATGCCAGAAAGCCCCAGTTCACACAATGTACAGAACAATTGTTAACAGTGGTGTAGCCTTTGGGGCAAGGCATTGGATGGCTACTCTGCAACTACAATGCGAACGCCTTGTTTTCTTCATGGCCACAAATGTCCCCACAAAGGATTCGACCGCTGTTGGAGCACTAGTTGGGAGGAAGAGCATTTTGAAGCTGGCACAGAGAATGACATCCAGTTTTTGTCAAGCAATAGGAGCATCGAGCTATCATTCATGGACCAAGGTTGCAAGCAAAACAGGGGAGGATATAAGAATCGCTTCTCGGAAAAACTTGAATGACCCGGGTGAGCCGCTAGGGGTGATCTTGTGTGCCGCTTCTTCTGTCTGGTTGCCTGTTTCTCCTCAAACCCTCTTTGATTTCTTGACAGACGAATCTCGTAGAGCTGAGTGGGATGTTTTGTCAAACAATGGGGTGGCACAAACGGTTGCGACCTTAGCCAAAGGACAAGATCGGGGCAATGCCGTTGCCATCCAAGAAGTGAAATTGAAAGAAAAGACTACGTGGGTACTTCAAGACACCTTCACAAATTCATACGAGTCAATGGTGGTCTATGCTCAAGTGGACATGACCGGAATGAAGTCCGTAATGACCGGGTGTGACTCGGGCAACTTAGTGGTTTTACCTTCTGGATTCTCAATTCTTCCAGACGGAGTCGAATCAAGACCGCTAGTCATCAGTTCTAGGCAAGAAGAGAGGAGCACAGAAGGATCTGGATCTTTGCTCACAATAGCATTCCAAATCTTGACCAATTCATCTCCTACAGCTAAACTAACCATGGACTCTGTGGAGTATGTTGACAGTGCCTTATCATCTACTTTGAGAAGTATTCGGACAAGCTTGCAGTGCGAAGATGGGTGA 2310 46.49 MGLNMSNKQKPPSLTKDFFAASPALSLSLAGIFRHAGEAAAAANMEVEEGDEGSGGGGGGKGRREDSALEISSENSAGGLVRSRSDDDFDGEGDQDDDEDGDNNSNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKKLGLAPRQVKFWFQNRRTQIKAIQERHENSLFKTEMEKLREENKGMREIISKACCPNCGTSTPSKDIPLLTSTEDQQLRIENARLKAEVEKLRAAIGKYLPGTTSGNSSCTAENNPENRTTLDFYTGIFVLEKPKIMEIVNQAMEELIKMATSKEPLWVRSIETGREILNYDVYTKEFPVENLSNDGPKRSIEASRETSVVFMDLPRLVHSFMDVNQWKEMFPCMISKAAAVDVICNGEGANKNGAVQLMFAELQMLTPMVPTREVYFIRFGKQLSPEQWAIVDVSIDKVEDNINASLVKFRKHPSGCIIEDKSNGHCKVIWVEHLECQKAPVHTMYRTIVNSGVAFGARHWMATLQLQCERLVFFMATNVPTKDSTAVGALVGRKSILKLAQRMTSSFCQAIGASSYHSWTKVASKTGEDIRIASRKNLNDPGEPLGVILCAASSVWLPVSPQTLFDFLTDESRRAEWDVLSNNGVAQTVATLAKGQDRGNAVAIQEVKLKEKTTWVLQDTFTNSYESMVVYAQVDMTGMKSVMTGCDSGNLVVLPSGFSILPDGVESRPLVISSRQEERSTEGSGSLLTIAFQILTNSSPTAKLTMDSVEYVDSALSSTLRSIRTSLQCEDG 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8207072 8210688 - Conep20aG0129100.1 Cone20ag1249 461153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1249 769 Pfam START domain 284 507 IPR002913 GO:0008289(InterPro)
Cone20ag1249 769 CDD START_ArGLABRA2_like 278 506 - -
Cone20ag1249 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 97 767 IPR042160 -
Cone20ag1249 769 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone20ag1249 769 Gene3D - 281 503 IPR023393 -
Cone20ag1249 769 Gene3D - 97 182 - -
Cone20ag1249 769 FunFam Homeobox-leucine zipper protein GLABRA 2 283 506 - -
Cone20ag1249 769 SUPERFAMILY Bet v1-like 537 756 - -
Cone20ag1249 769 SMART HOX_1 110 172 IPR001356 GO:0003677(InterPro)
Cone20ag1249 769 Pfam Homeodomain 111 166 IPR001356 GO:0003677(InterPro)
Cone20ag1249 769 MobiDBLite consensus disorder prediction 39 118 - -
Cone20ag1249 769 ProSiteProfiles 'Homeobox' domain profile. 108 168 IPR001356 GO:0003677(InterPro)
Cone20ag1249 769 Coils Coil 220 240 - -
Cone20ag1249 769 ProSiteProfiles START domain profile. 274 510 IPR002913 GO:0008289(InterPro)
Cone20ag1249 769 SUPERFAMILY Homeodomain-like 98 169 IPR009057 -
Cone20ag1249 769 SMART START_1 283 507 IPR002913 GO:0008289(InterPro)
Cone20ag1249 769 CDD homeodomain 115 166 IPR001356 GO:0003677(InterPro)
Cone20ag1249 769 FunFam Homeobox-leucine zipper protein HDG1 95 184 - -
Cone20ag1249 769 SUPERFAMILY Bet v1-like 277 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1249 Cone-Chr20:8207072 Cone8ag1442 Cone-Chr8:11179665 7.07E-180 dispersed
Cone16ag0698 Cone-Chr16:8232493 Cone20ag1249 Cone-Chr20:8207072 1.12E-292 wgd
Cone17ag0165 Cone-Chr17:813315 Cone20ag1249 Cone-Chr20:8207072 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45655 PF17815 PDZ_3 4.60E-40 CL0466 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1249 K09338 - vvi:100256623 1092.8