Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1260 ATGACAAATCCGATCAACAGTGCAGAAGAACAAGCTAAAAGCACAATCACTAGCAACTCATCAATGGCGGAAAAGCCACGGCCGAACAAGAAAAGAGCAGGAGATGATCATGGTAATATGAATTGTAACGACAGCAGCAGCAGAAGCAACAAGCATCCCGTGTACAGGGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTTTCGGAAATCCGCGAGCCGCGAAAGAAATCCCGTATCTGGCTCGGCACCTTCTCCACGCCGGACAAAGCGGCGCGTGCCCACGACGTCGCGGCTCTGAGCATTAAAGGGGATTCTGCGCGTGCTATTCTGAATTTCCCGGAACTCGCTGAGGTCTTACCTCGGCCCGTGTCGTTAATGCCACGCGACATTCAGTCGGCTGCTGCCAAGGCGGCCGGGATGGTGGTCAACTTTGACTCATCCGCCACGTCATCATCGTCGTCCTCTTCTTCTGTGGTGGGTTGTTGTGCGGATTCTTGTGATGAAGATCAAGAGCTGGGGGAGATTGTGGAGTTGCCGAATATAGAAGGGAGCTGTGAGTTGACCGAGTTGAACCTGAAGGAATTTATATGGGTTGACTCGGTGGATGCAGGGTGGGTGTACCCTCCTCCGGCGTGTGAGGCGGAGGTGGCAGCTGGATTCTGGCAGGGTGAAGAGAGCTTGATTATGAGCAGCAGCTTTACTGGTGGTCTTGGGTGGGACTAA 723 53.53 MTNPINSAEEQAKSTITSNSSMAEKPRPNKKRAGDDHGNMNCNDSSSRSNKHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFSTPDKAARAHDVAALSIKGDSARAILNFPELAEVLPRPVSLMPRDIQSAAAKAAGMVVNFDSSATSSSSSSSSVVGCCADSCDEDQELGEIVELPNIEGSCELTELNLKEFIWVDSVDAGWVYPPPACEAEVAAGFWQGEESLIMSSSFTGGLGWD 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8254933 8255655 + Conep20aG0130400.1 Cone20ag1260 461164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1260 240 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 185 IPR051032 -
Cone20ag1260 240 CDD AP2 55 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 Pfam AP2 domain 53 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677(InterPro)
Cone20ag1260 240 SMART rav1_2 54 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 MobiDBLite consensus disorder prediction 1 55 - -
Cone20ag1260 240 ProSiteProfiles AP2/ERF domain profile. 54 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag1260 240 MobiDBLite consensus disorder prediction 1 24 - -
Cone20ag1260 240 FunFam Ethylene-responsive transcription factor 2 53 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1260 Cone-Chr20:8254933 Cone7ag0709 Cone-Chr7:4093784 9.92E-52 dispersed
Cone17ag0153 Cone-Chr17:766808 Cone20ag1260 Cone-Chr20:8254933 5.83E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45656 PF00462 Glutaredoxin 3.90E-11 CL0172 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1260 K09286 - rcu:8274535 206.068