Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1266 ATGGCGATGTCCTGCAAGGATGGTAGCAAAGGAGTGATGGATAATGGAAAATACGTTAGGTATACACCTGAGCAGGTTGAAGCACTAGAAAGGCTCTATCATGAATGCCCTAAACCCAGTTCTATTCGTCGCCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAGATTAAAGTTTGGTTTCAAAACAGAAGATGCAGAGAGAAGCAGAGGAAGGAAGCGTCAAGGCTGCAAGCTGTGAATAGGAAGTTGACAGCCATGAATAAGCTGTTAATGGAGGAGAACGATCGGTTGCAGAAGCAGGTGTCGCATTTGGTATATGAAAATGGCTACTTCCGTCAGCATACTCAGAATACGACGCTTGCGACGAAAGATGCAAGTTGTGAACCGGTGGTGACTAGCGGTCAACACAATTTGACATCTCAGCATCCCCCACGAGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCATTGGTGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAGCCTACTAGGGTTGCAGAAATCCTTAAGGATAGGCCATCGTGGTTCCGCGACTGCCGAGCTTTGGATGTGCTTAACGTGCTGCCTACCGCGAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTCTATGCGCCAACGACTTTGGCGCCTGCTCGTGACTTTTGGTTGTTACGTTATACTTCTGTTCTTGAAGATGGTAGCCTTGTGGTTTGTGAAAGATCTCTTAAGAACACTCAGAATGGTCCCACCATGCCATCCGTGCAACATTTTGTTAGAGCAGAAATGATGCCTAGTGGCTATCTGATACGGCCATGTGAAGGGGGCGGGTCAATCATACACATTGTTGATCACATGAATTTGGAGCCATGGAGTGTGCCTGAGGTATTGCGTCCATTGTATGAATCATCGACTGTTCTTGCTCAGAAGACTACTATGGCTGCTCTACGCCAGCTTAGGCAGATAGCTCATGAGGTATCTCAGTCTAATGTATCTGGGTGGGGCAGACGTCCTGCAGCTCTACGAGCTCTTGGTCAGAGATTGACCAGGGGTTTTAATGAGGCGCTTAATGGGTTTAACGATGAGGGCTGGTCAGTGATGGGAAATGATGGCATGGATGATGTCACCATTCTTGTAAACTCATCTCCTGATAAACTAATGGGTTTAAACCTCTCGTTTTCAAATGGATTCTCTCCTGTTAGCAATGCTGTTTTATGTGCCAAAGCATCCATGCTCTTGCAGAATGTACCACCTGCCATCCTACTTAGGTTCCTAAGGGAGCATAGGTCAGAATGGGCCGACAATAACATTGATGCTTACTCGGCCGCTGCCATTAAAGTCGGCCCCTGTAGCTTACCTGGCTCTCGAGTCGGAAGCTTTGGAAGTCAAGTAATTCTTCCTCTAGCTCATACCATTGAACATGAAGAGTTTCTGGAAGTAATCAAGTTAGAAGGTATTGGCCATTCCCCTGAAGAAGCCATGATACCTAGAGAAATGTTTCTCTTGCAACTATGCAGCGGAATGGATGAAAATGCAATAGGCACTTGTGCAGAACTAATATTTGCACCAATAGACGCCTCTTTTGCTGATGATGCACCTCTTCTCCCTTCAGGATTTCGAATCATACCTCTCGACTCTGGCAAGGAAGCCTCGAGCCCAAATCGCACTCTTGACCTTGCTTCTGCACTTGAAATTGGGCCTGCGGGAAATAAATCGACAAGTGATTACAGTGGAGGTTCTGGGTGTACAAGATCTGTAATGACTATAGCATTTGAATTTGCATTTGAGAGCCACATGCAAGACCATGTTGCCTCCATGGCTCGCCAATATGTTCGCAGCATTATATCCTCTGTTCAACGAGTAGCCTTAGCTCTGTCTCCTTCCCATTTGAGTTCCCAAGCCGGTTTGCGGTCTCCACTTGGTACACCTGAAGCTCAAACACTTGCTAGCTGGATATGCAACAGTTATCGATGCTATTTGGGTCTGGAGCTGCTCAAATCAGGGAATGAAGGGAATGAATCTGTTCTTAAGACATTATGGCATCACTCTGATGCAATCATGTGCTGCTCATTGAAGGCACTGCCAGTTTTTACCTTTGCAAACCAGGCCGGGCTTGATATGCTCGAGACCACATTGGTTGCACTACAAGACATAACTTTGGAGAAAATATTTGATGATCATGGAAGAAAGACACTCTGCACCGAGTTTCCACAGATAATGCAACAGGGTTTTGCTTGTCTTCAAGGGGGGATCTGTCTGTCAAGCATGGGGCGACCGGTTTCATATGAAAGAGCAGTGGCTTGGAAGGTATTGAATGAGGAGGAGAATGCTCACTGCATCTGCTTCATGTTTGTGAACTGGTCCTTCATTTGA 2517 46.88 MAMSCKDGSKGVMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDASCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCIGVAARACGLVGLEPTRVAEILKDRPSWFRDCRALDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTMPSVQHFVRAEMMPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAHEVSQSNVSGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNLSFSNGFSPVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAIKVGPCSLPGSRVGSFGSQVILPLAHTIEHEEFLEVIKLEGIGHSPEEAMIPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNKSTSDYSGGSGCTRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRSPLGTPEAQTLASWICNSYRCYLGLELLKSGNEGNESVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCTEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFI 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8282202 8287519 + Conep20aG0131000.1 Cone20ag1266 461170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1266 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Cone20ag1266 838 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Cone20ag1266 838 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Cone20ag1266 838 Coils Coil 72 106 - -
Cone20ag1266 838 Gene3D - 8 83 - -
Cone20ag1266 838 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Cone20ag1266 838 SUPERFAMILY Bet v1-like 160 371 - -
Cone20ag1266 838 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289(InterPro)
Cone20ag1266 838 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Cone20ag1266 838 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cone20ag1266 838 CDD bZIP 69 108 - -
Cone20ag1266 838 CDD START_ArGLABRA2_like 155 371 - -
Cone20ag1266 838 Pfam MEKHLA domain 695 837 IPR013978 -
Cone20ag1266 838 Gene3D - 197 379 IPR023393 -
Cone20ag1266 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Cone20ag1266 838 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Cone20ag1266 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 838 IPR044830 GO:0003700(InterPro)
Cone20ag1266 838 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1301 Cone-Chr11:9613529 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone17ag1132 Cone-Chr17:8371084 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone1ag0299 Cone-Chr1:2187418 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone1ag0733 Cone-Chr1:6795882 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone20ag0590 Cone-Chr20:3410290 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone20ag1266 Cone-Chr20:8282202 Cone5ag1545 Cone-Chr5:10640417 0 dispersed
Cone20ag1266 Cone-Chr20:8282202 Cone17ag0143 Cone-Chr17:733744 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45658 PF03462 PCRF 9.80E-69 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1266 K09338 - csv:101213106 1602.03