Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1276 ATGGATCTTCCACCGCGATTTCTCCTCTACTTACTTCTACTTCTCCTCTTCCAATTTCACCTTCTCTGTTCGTCTTCCCCGACGCCGATGAACTGTACGGACACCACTCGCGTATGCACTTCATTCTTAGCCTTCAAGCCACAGCCGAACCAGACTCTATCCGTGATCCAGAGCATGTTCGACGTTTTAGCCGGCGACGTCACCGTCGACGGCGGCGGAGGTGGCGTCGGCCGAGGGGACTATATCTTCATCAAGAAGAACTGTTCGTGTGCGGCGGGGTATAAGAAGTACATTACGAACACGACGCTAACCGTCAAATCAAACGAGGGTTACGTGGACGAGTTGGTTATGGTGGCTTATGAAGGGCTTGCTTTGATGCTTAATACGACGAGGAAGGCGCAGATTGGGGCTGTGATCTCCTTGAGAATGTTCTGCGGCTGTTCGGATGGGCTTTGGAATTACTTGATGAGCTATGTGATGAAGGATGGCGATAGTATTCAGTCCCTTTCCAGTCGGTTTGGGGTTAGTATGGATAGTATTGAATCTGTGAATGGAATACAGAATCCTGATAATGTCACTGTCGGTTCTCTCTATTACATTCCTCTCAATTCAGTTCCCGGTGAGCCTTATCCTGTGGAGACTGATATTCGACCTTCTTCTTCCCCAAGTATGGCTCCACCTGCCGACAGTTTCTCAGCAACTGCAGAGAAGCGTAAGGGTCATGGTCCGTATGTATGGATTGTTGGAAGTTTAGGTGTTGTTCTTGTTCTTGTTTTGTTGGGGGTAGTTGTTTTCTGTTTCTCAAAGTCATCGAACTGCTGTTGGGGATCTAGAAGAACTCGTGTGAAAGATCCTAGTGACAAGGATTCACATAAGTTTCAAGTTCTTCGAAACCCAAGCTTCTTCTGTGCTTCTGGAAGGTACATCTGCTGCCGATCTGGAGATCATAAACAAACAAATGGGGAACCAAGCAATAACCAAGTTGCAATTCCAAAAGGTTTAGAGAGCGTTGTGTTTGATGTCGAAAAACCTGTGGTTTTTACATTCGAAGAAATCTTTTCCTCAACCGACGGTTTCTCTGATTCGTATCTTCTTGGCCATGGAACTTATGGCTCAGTGTATTATGCCTCCCTTCGTGACCAGGAAGTGGCAATTAAGAGAATGACTGCTTTGAAAACTAAAGAGTTTATGGCGGAAATGAAAGTACTCTGCAGGGTTCATCATGCAAATCTGGTAGAATTGATTGGATACGCTACCAGCGAGGGTGAACTCTTCCTTATTTATGAATACGCCCAAAAGGGTTCTCTTGGAAGTCATTTACATGATCCTCAGAACAAGGGTTATACATCACTTTCTTGGATCATGCGGGTCCAGATTGCTCTTGATGCTGCTAGAGGTCTTGAATACATTCACGAGCACACTAAGACCCATTACGTGCATCGAGATATCAAGACAAGCAATATATTACTAGATAGTACTTTTCGAGCTAAGATTTCTGATTTTGGGTTGGCAAAACTCGTTGGAAAAACAAGTGAGGGGGAAGCTTCCGTGACCAAAGTTGTGGGGACATTTGGTTATTTGGCTCCTGAATATTTGAGTGATGGTCACGCCACAGCCAAAAGTGACGTGTATGCCTTTGGTATTGTTCTATTCGAGCTTATATCTGGAAGGGAGGCCATTATTCGAACTGAAGGTTTGACCATGAAAAATATTGAAAGACGGGCTCTCGCCTCCGTTATGCTGACTGCTCTTAGGAATGCACCCGACTCGATGACTATGTCAAGCCTGAAAGATCACATCGACCCAAATATGTTGGATTTGTATCCTCATGATTGTCTGTTCAAGATGGCTATTCTTGCAAAGCAATGCGTAGAGGAGGACCCCATTCTCCGGCCCGACATGAAGCAGGTTGTGATATCCCTGTCTCAAATATTGTTGTCTTCTGTTGAGTGGGAAGCAACTCTTGCCGGTAACAGCCAAGTTTTCAGTGGTCTCGTCCAAGGAAGATAG 2010 45.42 MDLPPRFLLYLLLLLLFQFHLLCSSSPTPMNCTDTTRVCTSFLAFKPQPNQTLSVIQSMFDVLAGDVTVDGGGGGVGRGDYIFIKKNCSCAAGYKKYITNTTLTVKSNEGYVDELVMVAYEGLALMLNTTRKAQIGAVISLRMFCGCSDGLWNYLMSYVMKDGDSIQSLSSRFGVSMDSIESVNGIQNPDNVTVGSLYYIPLNSVPGEPYPVETDIRPSSSPSMAPPADSFSATAEKRKGHGPYVWIVGSLGVVLVLVLLGVVVFCFSKSSNCCWGSRRTRVKDPSDKDSHKFQVLRNPSFFCASGRYICCRSGDHKQTNGEPSNNQVAIPKGLESVVFDVEKPVVFTFEEIFSSTDGFSDSYLLGHGTYGSVYYASLRDQEVAIKRMTALKTKEFMAEMKVLCRVHHANLVELIGYATSEGELFLIYEYAQKGSLGSHLHDPQNKGYTSLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDSTFRAKISDFGLAKLVGKTSEGEASVTKVVGTFGYLAPEYLSDGHATAKSDVYAFGIVLFELISGREAIIRTEGLTMKNIERRALASVMLTALRNAPDSMTMSSLKDHIDPNMLDLYPHDCLFKMAILAKQCVEEDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8330605 8334173 - Conep20aG0132000.1 Cone20ag1276 461180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1276 669 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 13 658 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cone20ag1276 669 ProSitePatterns Protein kinases ATP-binding region signature. 365 392 IPR017441 GO:0005524(InterPro)
Cone20ag1276 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1276 669 MobiDBLite consensus disorder prediction 215 234 - -
Cone20ag1276 669 SMART LysM_2 157 201 IPR018392 -
Cone20ag1276 669 SUPERFAMILY LysM domain 156 201 IPR036779 -
Cone20ag1276 669 Pfam LysM domain 158 195 IPR018392 -
Cone20ag1276 669 SMART serkin_6 359 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1276 669 Gene3D LysM domain 153 207 IPR036779 -
Cone20ag1276 669 FunFam PTI1-like tyrosine-protein kinase 3 431 655 - -
Cone20ag1276 669 Pfam Protein tyrosine and serine/threonine kinase 365 639 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1276 669 ProSiteProfiles Protein kinase domain profile. 359 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1276 669 SUPERFAMILY Protein kinase-like (PK-like) 344 642 IPR011009 -
Cone20ag1276 669 Gene3D Phosphorylase Kinase; domain 1 333 430 - -
Cone20ag1276 669 Gene3D Transferase(Phosphotransferase) domain 1 432 656 - -
Cone20ag1276 669 ProSiteProfiles LysM domain profile. 156 200 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1276 Cone-Chr20:8330605 Cone6ag1352 Cone-Chr6:10877275 8.33E-74 dispersed
Cone3ag1237 Cone-Chr3:31129344 Cone20ag1276 Cone-Chr20:8330605 9.65E-06 dispersed
Cone9ag1287 Cone-Chr9:9646456 Cone20ag1276 Cone-Chr20:8330605 3.72E-43 dispersed
Cone19ag1053 Cone-Chr19:7770151 Cone20ag1276 Cone-Chr20:8330605 1.46E-120 transposed
Cone6ag1157 Cone-Chr6:8823645 Cone20ag1276 Cone-Chr20:8330605 1.23E-93 transposed
Cone3ag1321 Cone-Chr3:32159066 Cone20ag1276 Cone-Chr20:8330605 1.33E-87 transposed
Cone17ag0133 Cone-Chr17:684423 Cone20ag1276 Cone-Chr20:8330605 0 wgd
Cone20ag1276 Cone-Chr20:8330605 Cone4ag0731 Cone-Chr4:4028971 6.42E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82572 PF00043 GST_C 7.50E-17 CL0497 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1276 - - - 0.0