Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1285 ATGGATTCAAGTGTCAAGTACTTCCTCCTTACCTGGTTTGCTGCTTTTCTGTCTCTAACCTGTTTGATCAGTTGCCAGAACCAGCTTGGCTTCATAAGCTTGGACTGTGGATTATCTGCGAATTCTAACTATACGGAACCAATAACGGGCCTTGATTACATATCCGATGAAGTCTTCATAGATACGGGCATAACAAAGAACATATCGAGTAAGTGCTGGAAAAACAGTTTACAACTTCAGCTTTCGAGTGTCAGGAGCTTTCCTCGAGGAACTAGAAATTGTTACAAGATACAAGTAGAAACCGATACTAAGTACTTGATTCGAGGTAGTTTCTTGTATGGGAATTATGATGGTAAAGGCAAGATTCCGGGGTTTGATTTGCATTTGGGCCCGAATTTGTGGACCTCGGTTGTTTTAACAAGCGAAAACAGTATTGTTCATTATGAACTCATTCATCTCCCTTCTTCAGATAGTATAGATGTTTGTCTTGTGAATACCGGAAATGGAATTCCTTTTATATCGGCATTAGAATTTAGGCCTTTGAAAAACTCCAGCTACATAATGAATAAAACTCAACCCGGATCATCTTTGTCATTGCTCTTTCGGCAAGATAGTGGGAACCGCAACAACCAATCAAACTACAGAGATGATGTTTTTGACCGAATCTGGTCTTCACTTGTTCCAAACATCGATTGCACTGACTGGACTCATCTAACTACTCCCCTCACGGTAGATCCTGCAATCCGTCATGTTTATGAGCCACCTTCCATTGTCATGTCTAGTGCATCAACTCCGACGAATGCTAGTGCTCCTTTGGTTATTTCATGGCCTGTTTCTGATACCAATGCTCAATATTATGTCTATATGTACTTTGCGGAACTTGAAAACCTTTTATCCAACCAATCCCGAGCATTCAACATCTCCAAAAATGGCAAACCATATTTAACCGAACCGCTTTCTCCTGCATACCTATCTACCATTGTAGTTTATAGTGAGACTCCTAGTTTTGGATCAAATGGAAGATTAACTTTTGAGCTGGAGAGAACTGGTACTTCAACTCTTCCACCAATTCTAAACGCACTTGAAGTTTATTTTGTTCTGCAACTCCCACAATCAGGAACTGACCCAGAAGATGTTGATGCTATCACAAATATCAAGTCGTTTTACGGGGTTAGAAGCAGAAATTGGGAGGGAGATCCATGTGGCCCTAAAGAATACACATGGTCTGGTCTTGAATGTAACTATGATGACTATGATTTCCCTAGAATCACATCTTTGGACTTATCATCGTCTGGATTGACCGGGGAAATACTGGCACATATATCAGATCTTAAAATGATGGAGAAATTGGATTTGTCGAACAATAGCTTAATCGGATCAGTGCCAGAGTTCTTGTCCCAGTTGCCATTGTTAAGAAACTTGGAAGGAAACAACCTTTCCGGATCCATTCCTCTTCAGCTCACTGAAAAGTCGAACAGTGGTTTTCTAACATTAAGTGTGGGAGAAAATCCAAATCTATGTACAACAAATTCCGGAAAATCGGAGAACAACATTATCGTTCCGGTAGTAGCATCGGTTGGTGGAGTTTTGGCAATCCTTCTACTATTAGTTGCAGCTCTTCTTTTTTTTAACCTTAAAAGAAGATCAAAACAAAAACAAGAAGTTGAGATAGCAAATGTGAAACTTGAGGATCGAAACGAGCCTGATTTGGAGAAAAGAAAAAAATTAACATACTCAAGAGTCCAAAGCATCACCAAAAAGTTTGAGATAATGCTCGGTCAAGGCGGGTTCGGAAGAGTTTACTATGGCCGTCTAGATAAGAATGAAGTTGCTGTAAAGATGCTTTCTCCTGAATCTGTTCAAGGATATGCTCAATTTCAGGCAGAGGTTAACCTTCTAATGAGTGTCTATCACAAAAACTTGACTCGCCTTCTCGGGTATTGCATCGAGGGAACGAACATGGGACTCGTATATGAATACATGGGCAGAGGAAACTTAGCTGATCTTCTTCTTTCAGAAAATGTTTTGAATTGGCTGGACAGGATTAGAATAGCATTGGATGTTGCACAAGGGTTAGAGTATCTACATAATGGTTGCAAACCACCTATAGTACACAGAGATGTCAAGCCTACAAACATCTTATTAAACCGAAACTTCGAAGCAAAACTCGCCGATTTTGGCTTATCCAGAGTTTTTCCGGCAGACGGAGACACTCATGTTACGACCAATGTTGTTGGTACAACTGGTTATCTTGATCCACAGTACCATACGACTTTCCGATTAACTGAGAAGAGTGATGTCTATAGTTTTGGAGTTGTTCTGTTGGAACTAATCACTGGAAGAGGTGTAATCACTACAAGTCACGAGAAGAGCCATATAAGTCAATGGGTTGGATTCAAGCTTGCTCAAGGTGATATCAAAGCTATCATTGATCCAAAGCTGAGAGGTGATGATTACAATATCAACTCTGTTTGGAAAGCTGTTGAAATTGCAATGTCTTGTGTATCTTTCAGTTCTTCCCACCGGCCGACTATGAGCGTAGTTGTCGCGGAGCTAAAAGACTGTTTGGAAACAGAGTTAGGTCCTATAGAAGATATTCGAGACACTGTTTATATTCTCAAAGATGCTGTCTGA 2634 40.32 MDSSVKYFLLTWFAAFLSLTCLISCQNQLGFISLDCGLSANSNYTEPITGLDYISDEVFIDTGITKNISSKCWKNSLQLQLSSVRSFPRGTRNCYKIQVETDTKYLIRGSFLYGNYDGKGKIPGFDLHLGPNLWTSVVLTSENSIVHYELIHLPSSDSIDVCLVNTGNGIPFISALEFRPLKNSSYIMNKTQPGSSLSLLFRQDSGNRNNQSNYRDDVFDRIWSSLVPNIDCTDWTHLTTPLTVDPAIRHVYEPPSIVMSSASTPTNASAPLVISWPVSDTNAQYYVYMYFAELENLLSNQSRAFNISKNGKPYLTEPLSPAYLSTIVVYSETPSFGSNGRLTFELERTGTSTLPPILNALEVYFVLQLPQSGTDPEDVDAITNIKSFYGVRSRNWEGDPCGPKEYTWSGLECNYDDYDFPRITSLDLSSSGLTGEILAHISDLKMMEKLDLSNNSLIGSVPEFLSQLPLLRNLEGNNLSGSIPLQLTEKSNSGFLTLSVGENPNLCTTNSGKSENNIIVPVVASVGGVLAILLLLVAALLFFNLKRRSKQKQEVEIANVKLEDRNEPDLEKRKKLTYSRVQSITKKFEIMLGQGGFGRVYYGRLDKNEVAVKMLSPESVQGYAQFQAEVNLLMSVYHKNLTRLLGYCIEGTNMGLVYEYMGRGNLADLLLSENVLNWLDRIRIALDVAQGLEYLHNGCKPPIVHRDVKPTNILLNRNFEAKLADFGLSRVFPADGDTHVTTNVVGTTGYLDPQYHTTFRLTEKSDVYSFGVVLLELITGRGVITTSHEKSHISQWVGFKLAQGDIKAIIDPKLRGDDYNINSVWKAVEIAMSCVSFSSSHRPTMSVVVAELKDCLETELGPIEDIRDTVYILKDAV 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8393403 8397616 + Conep20aG0133100.1 Cone20ag1285 461189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1285 877 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 661 862 - -
Cone20ag1285 877 CDD STKc_IRAK 592 853 - -
Cone20ag1285 877 Gene3D Ribonuclease Inhibitor 380 497 IPR032675 -
Cone20ag1285 877 Gene3D Transferase(Phosphotransferase) domain 1 661 868 - -
Cone20ag1285 877 SUPERFAMILY L domain-like 419 508 - -
Cone20ag1285 877 SUPERFAMILY Protein kinase-like (PK-like) 576 852 IPR011009 -
Cone20ag1285 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1285 877 PANTHER OS07G0107800 PROTEIN-RELATED 26 857 - -
Cone20ag1285 877 ProSitePatterns Protein kinases ATP-binding region signature. 592 613 IPR017441 GO:0005524(InterPro)
Cone20ag1285 877 FunFam Leucine-rich repeat receptor-like kinase 377 509 - -
Cone20ag1285 877 Coils Coil 545 565 - -
Cone20ag1285 877 Pfam Malectin-like domain 34 366 IPR024788 -
Cone20ag1285 877 Gene3D Phosphorylase Kinase; domain 1 557 660 - -
Cone20ag1285 877 ProSiteProfiles Protein kinase domain profile. 586 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1285 877 SMART serkin_6 586 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1285 877 Pfam Protein tyrosine and serine/threonine kinase 588 851 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1285 Cone-Chr20:8393403 Cone4ag0941 Cone-Chr4:7887383 2.48E-276 dispersed
Cone4ag0226 Cone-Chr4:1037068 Cone20ag1285 Cone-Chr20:8393403 4.62E-36 dispersed
Cone7ag0236 Cone-Chr7:1002589 Cone20ag1285 Cone-Chr20:8393403 1.03E-37 dispersed
Cone20ag1284 Cone-Chr20:8374939 Cone20ag1285 Cone-Chr20:8393403 4.01E-246 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82575 PF00004 AAA 5.10E-36 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1285 - - - 0.0