Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag1297 | ATGAGTCAAGACCAGAAGCGGGGGAAGCAAGAGAAAGGCTCTGATGTTGCAGAGAAGGTAGTTGTTGCTGTTAAGGCCTCTAAGGAAATTCCGAAAAATGCATTAGTTTGGGCGTTAACCCATGTTGTTCAACCTGGAGACTGCATATCTTTGCTCGTAGTTGTCCCTTCACAAAGTTCTGGTAGAAGGCTATGGGGTTTTCCAAGATTTGCAGGGGATTGTGCCAGTGGTCACCGAAAAGGTCACACAGGCAGTAGCTCAGAGCTGAAAGGCGATATAACAGATACTTGCTCCCAAATGATTCTTCAGCTACATGATGTTTATGATCCGAATAAGATAAATGTGAAGATAAAAGTGGTTTCTGGATCACCTACTGGGTCAGTCGCTGCAGAGGCAAAAAGAGTTCAAGCCAGCTGGGTTGTTTTAGACAAACAGCTCAAGCATGAGGAAAAACGTTGCATGGAGGAGCTGCAGTGCAACATTGTGGTTATGAAGCATTCCCAGCCAAAAGTTCTCCGCTTAAATTTGGTTGGATCTCCTAAGAAGGAGACTGAGATAGTCTGTTCATTACCTTCTGATCTTGAAGGAGAGTCTGAAGACCACCCCCATGAGAAAAAAGATTGTTCAGTACGTGGGCCAGTAGTGACTCCGAGTAGTAGTCCGGACCTAGGCACGCCATTTACCATGACTGAAGCTGGAACTTCTTCCATGTCAAGCTCAGATCTTGGAACTTCACCATTTTTTATTCCTGTAATAAATGGGGATCTAAAGAAAGATGAAGCATTGGTCATCAAGGAAGATCAGGATCTAGATGACAGTAGTTCAGAGTCGGATGATGAAAATTCTTGTCTTTCTTCAGCGAGTCTTCGGTTCAAACCATGGATTAATGAAATTATAAGCCCTCATCACCAGTCATCACAATACATAAAGGGGAAGTCTCAGAGATATGATGTGATGCCACAAGCTTTGACAACTAACTCACTATTACAGAAATACTCAAAACTTGATAGAGAAGCGGGAGCTAAATTAGCAAATTATAGAACGGACATGGAGTTTGGCACAAATGTGAGAGAAGCAGTTTCGTTGTCCAGAAGCAATCCTCCTGGCCCACCTCCACTGTGTTCAATATGCCAACACAAGGCACCTGTTTTTGGTAAACCTCCAAGGTGGTTTAGCTATGCCGAGCTAGAGCTTGCTACTGGTGGGTTTTCACAAGCCAATTTCTTAGCAGAAGGAGGATTCGGATCTGTTCATAGAGGGGTATTACCTGATGGTCAGGTTGTTGCAGTCAAGCAACACAAATTAGCAAGCTCTCAAGGAGACCATGAATTTTGTTCAGAAGTTGAAGTCCTCAGTTGTGCTCAGCATAGAAATGTTGTCATGTTGATTGGGTTCTGTATCGAGGACAAAAGAAGGCTACTTGTTTATGAATATATCTGCAACGGTTCACTTGATTCTCATCTATATGGCCGGCAAAGGGACCATCTAGAATGGTCTGCAAGGCAAAAAATTGCCGTGGGAGCTGCGCGAGGACTGAGATATCTTCATGAAGAATGTAGAGTGGGTTGTATCGTTCACCGTGACATGCGGCCAAACAACATTCTCATCACTCATGATTTTGAACCAATGGTTGGGGATTTTGGTCTGGCAAGGTGGCAGCCAGATGGTGTCGAGGGCGTGGAAACTAGAGTTATCGGGACATTTGGGTATTTAGCTCCAGAATATGCTCAAAGTGGGCAGATCACGGAAAAAGCCGACGTTTATTCATTTGGGGTGGTACTAGCGGAGCTCATCACCGGACGAAAGGCAGTAGACCTTAATCAGCCCAAGGGCCAGCAGTGTCTCACTGAGTGGGCACGGCCTTTGTTAGAAGAGTTTGCCATCGATGAATTGATAGACCCAAGGCTGGGGGATAACTACTCAGAGCATGAAGTTTACTGTATGCTTCAAGCTGCATCCTTGTGTGTACGGCGGGACCCGGACACTCGACCTCGAATGTCTCAAGTGCTTCGTGTGTTGGAGGGTGGTGACATGGTGATGGACTCCAATTACATGTCAACTCCGGGTTCTGATGTAGGCAGCCGGAGTGGTCGGATGTGGACGTGGCTGCCACAACATCACAGTGGGCCCCTCTTGGATGATGTAATGGATAGGTTCAGTGGGAAGCTCTCTCTTGGAAATTCAAGACGTGGTTATTAG | 2199 | 45.7 | MSQDQKRGKQEKGSDVAEKVVVAVKASKEIPKNALVWALTHVVQPGDCISLLVVVPSQSSGRRLWGFPRFAGDCASGHRKGHTGSSSELKGDITDTCSQMILQLHDVYDPNKINVKIKVVSGSPTGSVAAEAKRVQASWVVLDKQLKHEEKRCMEELQCNIVVMKHSQPKVLRLNLVGSPKKETEIVCSLPSDLEGESEDHPHEKKDCSVRGPVVTPSSSPDLGTPFTMTEAGTSSMSSSDLGTSPFFIPVINGDLKKDEALVIKEDQDLDDSSSESDDENSCLSSASLRFKPWINEIISPHHQSSQYIKGKSQRYDVMPQALTTNSLLQKYSKLDREAGAKLANYRTDMEFGTNVREAVSLSRSNPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDHLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPMVGDFGLARWQPDGVEGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLAELITGRKAVDLNQPKGQQCLTEWARPLLEEFAIDELIDPRLGDNYSEHEVYCMLQAASLCVRRDPDTRPRMSQVLRVLEGGDMVMDSNYMSTPGSDVGSRSGRMWTWLPQHHSGPLLDDVMDRFSGKLSLGNSRRGY | 732 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8447839 | 8452944 | + | Conep20aG0134300.1 | Cone20ag1297 | 461201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag1297 | 732 | CDD | STKc_IRAK | 409 | 675 | - | - | |
Cone20ag1297 | 732 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 375 | 478 | - | - | |
Cone20ag1297 | 732 | Gene3D | Transferase(Phosphotransferase) domain 1 | 479 | 685 | - | - | |
Cone20ag1297 | 732 | Pfam | Protein kinase domain | 407 | 670 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone20ag1297 | 732 | MobiDBLite | consensus disorder prediction | 194 | 210 | - | - | |
Cone20ag1297 | 732 | PANTHER | OS01G0750732 PROTEIN | 282 | 683 | IPR050885 | - | |
Cone20ag1297 | 732 | Gene3D | HUPs | 3 | 177 | IPR014729 | - | |
Cone20ag1297 | 732 | FunFam | Dual-specific kinase DSK1-like | 11 | 165 | - | - | |
Cone20ag1297 | 732 | MobiDBLite | consensus disorder prediction | 192 | 240 | - | - | |
Cone20ag1297 | 732 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 524 | 536 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone20ag1297 | 732 | SUPERFAMILY | Protein kinase-like (PK-like) | 387 | 681 | IPR011009 | - | |
Cone20ag1297 | 732 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 479 | 683 | - | - | |
Cone20ag1297 | 732 | Gene3D | Phosphorylase Kinase; domain 1 | 375 | 478 | - | - | |
Cone20ag1297 | 732 | MobiDBLite | consensus disorder prediction | 213 | 240 | - | - | |
Cone20ag1297 | 732 | ProSiteProfiles | Protein kinase domain profile. | 403 | 680 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag1297 | Cone-Chr20:8447839 | Cone7ag0733 | Cone-Chr7:4436877 | 6.37E-241 | dispersed | |
Cone7ag1786 | Cone-Chr7:11727278 | Cone20ag1297 | Cone-Chr20:8447839 | 2.86E-32 | dispersed | |
Cone1ag1469 | Cone-Chr1:57021031 | Cone20ag1297 | Cone-Chr20:8447839 | 9.52E-97 | transposed | |
Cone16ag0743 | Cone-Chr16:8484471 | Cone20ag1297 | Cone-Chr20:8447839 | 1.22E-93 | wgd | |
Cone17ag0111 | Cone-Chr17:581592 | Cone20ag1297 | Cone-Chr20:8447839 | 0 | wgd | |
Cone20ag1297 | Cone-Chr20:8447839 | Cone4ag0787 | Cone-Chr4:4700713 | 3.66E-267 | wgd | |
Cone20ag1297 | Cone-Chr20:8447839 | Cone4ag0931 | Cone-Chr4:7749425 | 0 | wgd | |
Cone20ag1297 | Cone-Chr20:8447839 | Cone7ag1209 | Cone-Chr7:8992308 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82576 | PF00076 | RRM_1 | 6.10E-18 | CL0221 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag1297 | - | - | - | 0.0 |