Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1297 ATGAGTCAAGACCAGAAGCGGGGGAAGCAAGAGAAAGGCTCTGATGTTGCAGAGAAGGTAGTTGTTGCTGTTAAGGCCTCTAAGGAAATTCCGAAAAATGCATTAGTTTGGGCGTTAACCCATGTTGTTCAACCTGGAGACTGCATATCTTTGCTCGTAGTTGTCCCTTCACAAAGTTCTGGTAGAAGGCTATGGGGTTTTCCAAGATTTGCAGGGGATTGTGCCAGTGGTCACCGAAAAGGTCACACAGGCAGTAGCTCAGAGCTGAAAGGCGATATAACAGATACTTGCTCCCAAATGATTCTTCAGCTACATGATGTTTATGATCCGAATAAGATAAATGTGAAGATAAAAGTGGTTTCTGGATCACCTACTGGGTCAGTCGCTGCAGAGGCAAAAAGAGTTCAAGCCAGCTGGGTTGTTTTAGACAAACAGCTCAAGCATGAGGAAAAACGTTGCATGGAGGAGCTGCAGTGCAACATTGTGGTTATGAAGCATTCCCAGCCAAAAGTTCTCCGCTTAAATTTGGTTGGATCTCCTAAGAAGGAGACTGAGATAGTCTGTTCATTACCTTCTGATCTTGAAGGAGAGTCTGAAGACCACCCCCATGAGAAAAAAGATTGTTCAGTACGTGGGCCAGTAGTGACTCCGAGTAGTAGTCCGGACCTAGGCACGCCATTTACCATGACTGAAGCTGGAACTTCTTCCATGTCAAGCTCAGATCTTGGAACTTCACCATTTTTTATTCCTGTAATAAATGGGGATCTAAAGAAAGATGAAGCATTGGTCATCAAGGAAGATCAGGATCTAGATGACAGTAGTTCAGAGTCGGATGATGAAAATTCTTGTCTTTCTTCAGCGAGTCTTCGGTTCAAACCATGGATTAATGAAATTATAAGCCCTCATCACCAGTCATCACAATACATAAAGGGGAAGTCTCAGAGATATGATGTGATGCCACAAGCTTTGACAACTAACTCACTATTACAGAAATACTCAAAACTTGATAGAGAAGCGGGAGCTAAATTAGCAAATTATAGAACGGACATGGAGTTTGGCACAAATGTGAGAGAAGCAGTTTCGTTGTCCAGAAGCAATCCTCCTGGCCCACCTCCACTGTGTTCAATATGCCAACACAAGGCACCTGTTTTTGGTAAACCTCCAAGGTGGTTTAGCTATGCCGAGCTAGAGCTTGCTACTGGTGGGTTTTCACAAGCCAATTTCTTAGCAGAAGGAGGATTCGGATCTGTTCATAGAGGGGTATTACCTGATGGTCAGGTTGTTGCAGTCAAGCAACACAAATTAGCAAGCTCTCAAGGAGACCATGAATTTTGTTCAGAAGTTGAAGTCCTCAGTTGTGCTCAGCATAGAAATGTTGTCATGTTGATTGGGTTCTGTATCGAGGACAAAAGAAGGCTACTTGTTTATGAATATATCTGCAACGGTTCACTTGATTCTCATCTATATGGCCGGCAAAGGGACCATCTAGAATGGTCTGCAAGGCAAAAAATTGCCGTGGGAGCTGCGCGAGGACTGAGATATCTTCATGAAGAATGTAGAGTGGGTTGTATCGTTCACCGTGACATGCGGCCAAACAACATTCTCATCACTCATGATTTTGAACCAATGGTTGGGGATTTTGGTCTGGCAAGGTGGCAGCCAGATGGTGTCGAGGGCGTGGAAACTAGAGTTATCGGGACATTTGGGTATTTAGCTCCAGAATATGCTCAAAGTGGGCAGATCACGGAAAAAGCCGACGTTTATTCATTTGGGGTGGTACTAGCGGAGCTCATCACCGGACGAAAGGCAGTAGACCTTAATCAGCCCAAGGGCCAGCAGTGTCTCACTGAGTGGGCACGGCCTTTGTTAGAAGAGTTTGCCATCGATGAATTGATAGACCCAAGGCTGGGGGATAACTACTCAGAGCATGAAGTTTACTGTATGCTTCAAGCTGCATCCTTGTGTGTACGGCGGGACCCGGACACTCGACCTCGAATGTCTCAAGTGCTTCGTGTGTTGGAGGGTGGTGACATGGTGATGGACTCCAATTACATGTCAACTCCGGGTTCTGATGTAGGCAGCCGGAGTGGTCGGATGTGGACGTGGCTGCCACAACATCACAGTGGGCCCCTCTTGGATGATGTAATGGATAGGTTCAGTGGGAAGCTCTCTCTTGGAAATTCAAGACGTGGTTATTAG 2199 45.7 MSQDQKRGKQEKGSDVAEKVVVAVKASKEIPKNALVWALTHVVQPGDCISLLVVVPSQSSGRRLWGFPRFAGDCASGHRKGHTGSSSELKGDITDTCSQMILQLHDVYDPNKINVKIKVVSGSPTGSVAAEAKRVQASWVVLDKQLKHEEKRCMEELQCNIVVMKHSQPKVLRLNLVGSPKKETEIVCSLPSDLEGESEDHPHEKKDCSVRGPVVTPSSSPDLGTPFTMTEAGTSSMSSSDLGTSPFFIPVINGDLKKDEALVIKEDQDLDDSSSESDDENSCLSSASLRFKPWINEIISPHHQSSQYIKGKSQRYDVMPQALTTNSLLQKYSKLDREAGAKLANYRTDMEFGTNVREAVSLSRSNPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRDHLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPMVGDFGLARWQPDGVEGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLAELITGRKAVDLNQPKGQQCLTEWARPLLEEFAIDELIDPRLGDNYSEHEVYCMLQAASLCVRRDPDTRPRMSQVLRVLEGGDMVMDSNYMSTPGSDVGSRSGRMWTWLPQHHSGPLLDDVMDRFSGKLSLGNSRRGY 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8447839 8452944 + Conep20aG0134300.1 Cone20ag1297 461201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1297 732 CDD STKc_IRAK 409 675 - -
Cone20ag1297 732 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 375 478 - -
Cone20ag1297 732 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Cone20ag1297 732 Pfam Protein kinase domain 407 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1297 732 MobiDBLite consensus disorder prediction 194 210 - -
Cone20ag1297 732 PANTHER OS01G0750732 PROTEIN 282 683 IPR050885 -
Cone20ag1297 732 Gene3D HUPs 3 177 IPR014729 -
Cone20ag1297 732 FunFam Dual-specific kinase DSK1-like 11 165 - -
Cone20ag1297 732 MobiDBLite consensus disorder prediction 192 240 - -
Cone20ag1297 732 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1297 732 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Cone20ag1297 732 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 683 - -
Cone20ag1297 732 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Cone20ag1297 732 MobiDBLite consensus disorder prediction 213 240 - -
Cone20ag1297 732 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1297 Cone-Chr20:8447839 Cone7ag0733 Cone-Chr7:4436877 6.37E-241 dispersed
Cone7ag1786 Cone-Chr7:11727278 Cone20ag1297 Cone-Chr20:8447839 2.86E-32 dispersed
Cone1ag1469 Cone-Chr1:57021031 Cone20ag1297 Cone-Chr20:8447839 9.52E-97 transposed
Cone16ag0743 Cone-Chr16:8484471 Cone20ag1297 Cone-Chr20:8447839 1.22E-93 wgd
Cone17ag0111 Cone-Chr17:581592 Cone20ag1297 Cone-Chr20:8447839 0 wgd
Cone20ag1297 Cone-Chr20:8447839 Cone4ag0787 Cone-Chr4:4700713 3.66E-267 wgd
Cone20ag1297 Cone-Chr20:8447839 Cone4ag0931 Cone-Chr4:7749425 0 wgd
Cone20ag1297 Cone-Chr20:8447839 Cone7ag1209 Cone-Chr7:8992308 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82576 PF00076 RRM_1 6.10E-18 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1297 - - - 0.0