Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1300 ATGCAGTACCTAAACTCATTCTTCAACCAGCAAAAAAGAAAGACCATCATGTGGCCTCCATTCATGTTCTACACAAACACTAGTACTACTACAGCTCAGTACTTAGGCATGCTAATCACTGCGTTAATCCTCTTGACCACCATTATACTCTACGCCACCATTAATAACATGATAATCGCCTTTCAACGAAGACCGAAATCGTCATCAGCACGGAAAAATCTGCCAAAAGGCTCTCTCGGGCTGCCCCTTATCGGAGAAACCGTTCCGTTCATCTCTTCCGCTCTTTCTGACCGTCCCGAAACCTTTATGAACAAGCGCCGTGCCCTGTATGGGAAGGTGTTCAAGTCACATATATTTGGGAGTGCGACAATCGTATCGACCGATGCGGAAGTGAGTAGGGTAATTCTGCAAAGCGATGCGAAGGCTTTCGTGCCGTCTTATCCGAAATCCTTAACGGAATTAATGGGGAAGTCTTCTATCTTGCTTATGACAGGGAGTTTGCAAAGGAGGATTCATGGACTTGTTGGATCTTTCTTCAAGTCTCCTCACCTCAAAGCTCAAGTAACTGAAGACATGCAACACTATGTCAAGCAATCAATGGCAAGATGGAGTAGCACTACTCAATTTGATCATCATCATCCTATCTACCTTCAAGACGAATCAAAACATATTGCCTTTCAAGTACTTGTGAAGACACTGATAAGCTTAGAACCTGGTCAAGACATGGAGTTCCTCAAACACCAGTTCCGAGAATTCATCGCCGGCCTCATGTCTTTGCCCGTAAACTTACCCGGAACAAGACTCCATAGATCGTTACAGGCCAAAAGGAAGATGGTCAAGTTAGTTATGAAAACAATACAAGAGAGGAGAATGAATAGCAAAACTAGTACTCAGGTTCCAAAAGATGTGATGGATGTTTTGTTGATGAATGATTCAAGTGAAGAATTTACAGATGAGTTAATAGCAGGTAACATGATTGATATGATGATACCGGGTGAAGATTCCGTACCGCTTCTTATCACTCTTGCAATTAAGTATCTTTCCGATTGCCCTACCGCACGACAGCAATTAACGGAGGAAAATATGAAGATGAAAAGACTAAAAGCCCAACTTGGGGAGCCATTGCAATGGACTGATTACCTCTCACTGCCATTTACACAATCCGTAATTATAGAGACTCTAAGGATGGGGAATATTATAATAGGAGTGATGAGAAAAGCTGTAAATGACGTAGAGATAAAAGGATACTTCATACCAAAAGGATGGTCTATTTTTATTTATTTTAGATCGATTCATCTCGACGACAGTCTCTATAACTGCCCTCACCAGTTCAATCCATGGAGGTGGAAAGACAAAGACATGATGAACGGTTGCAACTTCACTCCGTTTGGTGGCGGGCAAAGGCTATGTCCTGGTCTTGACTTAGCCAAGCTGGAAGCTTCCATCTTTCTACACCATTTTGTCACTGAGTTCAGTTGGGTGGCTGAGGAGGATAGCATTATAAACTTCCCCACTGTAAGAATGAAAAAGAGGATGCCAGTTTGGGTCAAAAGAATAGTTGACCACTGA 1569 42.51 MQYLNSFFNQQKRKTIMWPPFMFYTNTSTTTAQYLGMLITALILLTTIILYATINNMIIAFQRRPKSSSARKNLPKGSLGLPLIGETVPFISSALSDRPETFMNKRRALYGKVFKSHIFGSATIVSTDAEVSRVILQSDAKAFVPSYPKSLTELMGKSSILLMTGSLQRRIHGLVGSFFKSPHLKAQVTEDMQHYVKQSMARWSSTTQFDHHHPIYLQDESKHIAFQVLVKTLISLEPGQDMEFLKHQFREFIAGLMSLPVNLPGTRLHRSLQAKRKMVKLVMKTIQERRMNSKTSTQVPKDVMDVLLMNDSSEEFTDELIAGNMIDMMIPGEDSVPLLITLAIKYLSDCPTARQQLTEENMKMKRLKAQLGEPLQWTDYLSLPFTQSVIIETLRMGNIIIGVMRKAVNDVEIKGYFIPKGWSIFIYFRSIHLDDSLYNCPHQFNPWRWKDKDMMNGCNFTPFGGGQRLCPGLDLAKLEASIFLHHFVTEFSWVAEEDSIINFPTVRMKKRMPVWVKRIVDH 522
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 8462824 8466231 - Conep20aG0134600.1 Cone20ag1300 461204
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1300 522 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS E-class P450 group I signature 107 126 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS E-class P450 group I signature 427 451 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 SUPERFAMILY Cytochrome P450 70 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS P450 superfamily signature 180 193 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS P450 superfamily signature 470 481 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 64 519 - -
Cone20ag1300 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cone20ag1300 522 Gene3D Cytochrome P450 64 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 CDD CYP90-like 106 514 - -
Cone20ag1300 522 Pfam Cytochrome P450 75 499 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cone20ag1300 522 PANTHER CYTOCHROME P450 26 73 491 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1300 Cone-Chr20:8462824 Cone6ag1653 Cone-Chr6:12616615 1.25E-166 dispersed
Cone20ag1300 Cone-Chr20:8462824 Cone9ag1578 Cone-Chr9:11342020 4.22E-167 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1300 K12638 - rcu:8266971 678.322