Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1308 ATGAGGATGCTGCTGCTGATCAAGCTAGGATTCAGTTTCCTTTTCTTATCAATCTCTGAAGCTAAAGAGACCATTGCATTGTCACTGAGAAGGCCGCCACGAAAATTTCCGGAAACTAGCCAAATTAGGCCAATTGAACCGCCCTCTCTTCCCCCAGAGCATGCTGTCTCTCCAACAACTGGTAGCTTTAGCAGAAAACGGCACGAAAAGTTAGTTGCTCACCCTCTGGGTAAATCACCGGCTCAGATGATCATGTCTTCTCCAGCTACAGAGATTCCAGTTAAGAAAAGGCCGGAAAAGAACCCGAATGGTCCTGCATCCTCACCATTAATATATTCTCACCATCATCACCATGGAAAAGGCAGATTTAGAAGCTTTGCTTCAAGCCCAAGTCATCCAATATTTCCACCGTCTTATACTCGCCACGGCCCTTCAAACTCTCCCTCAGCAGCTAGTCCGGGTTCTACTGCACGAGCACCGGCACCGGCACCAACAAGTCTATCAAACTACCTCAATATGCCGATTCCTTCCCTGAAAATTTCACCCTTGGCTTCTTCAGTAAAGAAGAAAAAGAACCCGCCAACACCACCAGTCCTAACCTTACCACCTCCACCTCCAAATGAAGATTGTAATACAATAACCTGCACCGAGCCATTAACATATACACCTCCCGGCTCACAATGTGGTTGTGTTTGGCCGGTTCAAGTCAGAATCCGCCTTGTTATCACAATAAACAATTTTTTCCCTTTAGTATCGGAATTGGCAAGTGAAATTGCAGATAGCATACTCATAAACCATAACCAAGTCCGCATTATTGGAGCCGATGCGGCTAGTCAACAGCTTGGGAAAACCACAGTTCTAATCAACTTAGTACCTAAAGGGGTCAAATTCAATGATACCACTTCCTTTTTGATATATAAAAAATTCTGGCAAAGAAAGGTTTCCATTAAGTCTTCCCTCTTTGGTGCCTATGAAGTACTCTATGTTCGATATCCAGGCCTTCCTCCTTCTCCACCTTCGGGATCTTCGAGCATTACTAATCTAGATGACGGGCCAAAGCCCGGTGATGTAATGGGTGGAAGTGCAGTTAAGCCTTTCCCAGTAGATATCCCAAGGGGAAGAAAACAAGGATTAGGTTCAAGCATGATTGTTGTAATAATCTTATCTTCTTTCACTGCCTTCGTCATATGTGTTGGAGTTATTTGGTTCTTACTGTTAAAGTGCAAAGCACGTGCCTTTGAATCCGAACAAGCTCCCCACACATTAATAGCATCCACGGAAAAACAAACAGGAACTGTTGGGTCTATAATGTTTGGAAGTGGTCCCGGTTTGGGGTCGATTTCATTGAACTCCGGTGCTCTAAAATACACAGGATCGGCCAAGAACTTCACTCTGAAAGATATAGAGAGAGCGACTAATAACTTTTCTGCTTCAAGAATACTTGGAGAAGGTGGCTTTGGGCTTGTTTATAAGGGCATTTTTGATGATGGAAGAGAAGCTGCTGTTAAGGTACTTAAGAGAGACAACCATCATGGAAGTAGAGAATTCTTAGCAGAAATTGAAATGCTTAACCGTCTACACCATAGAAATTTAGTTAAATTGCTCGGTATTTGTACGGAAGACCATGTCTGTTGCCTTATCTATGAACTCATCCCGAATGGAAGCATTGAATCCCATTTACACGGCATTGACAAAGAAACCGATCCGCTTGATTGGGATGCTCGGATGAAAATTGCCCTCGGAGCGGCTCGGGGCTTAGCCTATTTGCATGAGGATTCTAACCCTCGAGTCATTCACCGTGATTTCAAGTCGAGTAACATCTTATTGGATTATGACTTCACACCTAAAGTTTCCGATTTCGGTCTAGCTCGAACAGCATTAGAAGAAGGCAACAAACACATTTCCACTCATGTTATGGGAACTTTTGGATATTTGGCTCCTGAGTATGCTATGACAGGACATCTTCTAGTAAAGAGTGATGTTTACAGCTACGGAGTTGTTCTTCTAGAGCTACTTACCGGGAAAAAACCAGTAGACTTGTCACTGCTGTCCGGTCAAGAAAATCTCGTAACGTGGGCCCGCCCACTTCTCACCAGTAAAGAAGGATTGGAAAAGATAATCGACCCAAAATTAAAACCACAAGTCTCATTTGACAACCTCGCCAAAGTTGCGGCAATTGCTTCAATGTGTGTCCAACCTGAAGTGTCACATCGCCCTTTTATGGGCGAAGTCGTTCAAGCATTGAAGTTGGTTTGTAATGAGTTTGATGAAACAAAAGGTCTTATGGGGTCAAGAAGAAGAACGAGTTGTAGCCAGGAGGAGGAAATGGTGGATATGAGTAATAATGGTAGTAACAAGATTGTGGGTGTTTCCGAGTCGTGTCGGTCATTGCCGGAATGTGGAGTGGACCATGGGGGAAAGAGTGATGCCTTGTTGTCGACAGCTGATTGGTTGAATGCTTCCGTCGGGTTCAGAGAAGAGGACGATGATCAATCGTTTAGGAGATATTCGACTTCTGGCCCATTGAGAAGTGGAAGAAAAATACAGTTTTGGCAGCGGTTGAGGAGTTCGTCTAGAGGGAGTATGAGTGAGCATGGTTTCTCTTCAAAGTTTTGGTCAGGGCTCCATTAG 2631 44.09 MRMLLLIKLGFSFLFLSISEAKETIALSLRRPPRKFPETSQIRPIEPPSLPPEHAVSPTTGSFSRKRHEKLVAHPLGKSPAQMIMSSPATEIPVKKRPEKNPNGPASSPLIYSHHHHHGKGRFRSFASSPSHPIFPPSYTRHGPSNSPSAASPGSTARAPAPAPTSLSNYLNMPIPSLKISPLASSVKKKKNPPTPPVLTLPPPPPNEDCNTITCTEPLTYTPPGSQCGCVWPVQVRIRLVITINNFFPLVSELASEIADSILINHNQVRIIGADAASQQLGKTTVLINLVPKGVKFNDTTSFLIYKKFWQRKVSIKSSLFGAYEVLYVRYPGLPPSPPSGSSSITNLDDGPKPGDVMGGSAVKPFPVDIPRGRKQGLGSSMIVVIILSSFTAFVICVGVIWFLLLKCKARAFESEQAPHTLIASTEKQTGTVGSIMFGSGPGLGSISLNSGALKYTGSAKNFTLKDIERATNNFSASRILGEGGFGLVYKGIFDDGREAAVKVLKRDNHHGSREFLAEIEMLNRLHHRNLVKLLGICTEDHVCCLIYELIPNGSIESHLHGIDKETDPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKSSNILLDYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGKKPVDLSLLSGQENLVTWARPLLTSKEGLEKIIDPKLKPQVSFDNLAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDETKGLMGSRRRTSCSQEEEMVDMSNNGSNKIVGVSESCRSLPECGVDHGGKSDALLSTADWLNASVGFREEDDDQSFRRYSTSGPLRSGRKIQFWQRLRSSSRGSMSEHGFSSKFWSGLH 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8501028 8504821 - Conep20aG0135400.1 Cone20ag1308 461212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1308 876 Pfam Protein tyrosine and serine/threonine kinase 478 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1308 876 PANTHER OS01G0750732 PROTEIN 207 783 IPR050885 -
Cone20ag1308 876 MobiDBLite consensus disorder prediction 186 205 - -
Cone20ag1308 876 CDD STKc_IRAK 481 749 - -
Cone20ag1308 876 FunFam Receptor-like serine/threonine-protein kinase ALE2 551 772 - -
Cone20ag1308 876 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 449 550 - -
Cone20ag1308 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1308 876 ProSiteProfiles Protein kinase domain profile. 475 751 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1308 876 SUPERFAMILY Protein kinase-like (PK-like) 457 748 IPR011009 -
Cone20ag1308 876 MobiDBLite consensus disorder prediction 92 165 - -
Cone20ag1308 876 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524(InterPro)
Cone20ag1308 876 MobiDBLite consensus disorder prediction 35 67 - -
Cone20ag1308 876 MobiDBLite consensus disorder prediction 131 165 - -
Cone20ag1308 876 Gene3D Transferase(Phosphotransferase) domain 1 551 768 - -
Cone20ag1308 876 Gene3D Phosphorylase Kinase; domain 1 449 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1308 Cone-Chr20:8501028 Cone11ag0794 Cone-Chr11:6350743 4.89E-97 dispersed
Cone17ag0100 Cone-Chr17:531345 Cone20ag1308 Cone-Chr20:8501028 0 wgd
Cone20ag1308 Cone-Chr20:8501028 Cone7ag1127 Cone-Chr7:8486782 2.88E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82577 PF03242 LEA_3 1.30E-32 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1308 - - - 0.0