Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag1310 | ATGCCCAAAACTCCCATCAATCAAAACCTTAGCGACAGAAATATTAACAGCACTAACAGACACGTCGGAAACGGCTCTTCCTCCCCTTCAACGACGAGCCAAGCATGTGCCGCCTGTAAATATCAACGCAGGAAGTGCGCTTCGGACTGCATTCTCGCCCCTTACTTCCCTCACCACCGCCAACGCCAGTTTCAAAACGCCCATAAGCTGTTCGGCGTCAGCAACATTACTAAGATATTGAAAGCTCTAGATCCTTTCCAGAAGGAAGAAGCCATGAGGACTATCATCTTTCAATCCGACGTTAGAGCGACGGATCCCGTTGGCGGTTGTTATAGAATCATACGTGATCTTCAACGTCAGATTGAGTACAGCAAGGCCGAGCTCGACATTGTTCTTCACCAGCTCGCCATTTGTAAAGCCCAGGCGCAACAACAGGAGCAGAATGATCATTTTCATCCCCATGATCGCGAGGAGGAGGAGGATCCTTTGCATGTTCTGTCCCAGCAGTATCATCAGTATTTGCAGCAGCAGCACTCGTTTAATCAGGAACCGTATGTTCAGATTGATCAGAATCATGATCAGATCGTCTACCATGATTTGAAGGAAGATTTGAGCAGTTTGTGGGGCATGCAGGAATCCTTGCAGTCGTCTTCTTCGATTTCGTCTACTACGTTGCATGCCAAGGAAAGTTTGTTGCCTGAGCCATGTTCGAGTATTGAAGGATATGACCTTGATCATCATCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCATCATGATCATATCAAGATTGAAGCAGCACCTGCTGATAATTACGGTGACCAGAGAAATAATCATGTCGATCAGTTGAGTTTTGAGCCTGATCATCATCATGATCAACAAAAAGATCAGTTGGCTCCCCATGAAAGGTGGTCTGTTTACGTACCCTATTTATAG | 945 | 46.67 | MPKTPINQNLSDRNINSTNRHVGNGSSSPSTTSQACAACKYQRRKCASDCILAPYFPHHRQRQFQNAHKLFGVSNITKILKALDPFQKEEAMRTIIFQSDVRATDPVGGCYRIIRDLQRQIEYSKAELDIVLHQLAICKAQAQQQEQNDHFHPHDREEEEDPLHVLSQQYHQYLQQQHSFNQEPYVQIDQNHDQIVYHDLKEDLSSLWGMQESLQSSSSISSTTLHAKESLLPEPCSSIEGYDLDHHHPPPPPPPPPPPHHHDHIKIEAAPADNYGDQRNNHVDQLSFEPDHHHDQQKDQLAPHERWSVYVPYL | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8508985 | 8509929 | - | Conep20aG0135600.1 | Cone20ag1310 | 461214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag1310 | 314 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 33 | 179 | - | - | |
Cone20ag1310 | 314 | MobiDBLite | consensus disorder prediction | 284 | 302 | - | - | |
Cone20ag1310 | 314 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
Cone20ag1310 | 314 | MobiDBLite | consensus disorder prediction | 235 | 305 | - | - | |
Cone20ag1310 | 314 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cone20ag1310 | 314 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 130 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0098 | Cone-Chr19:557963 | Cone20ag1310 | Cone-Chr20:8508985 | 1.04E-30 | dispersed | |
Cone20ag1310 | Cone-Chr20:8508985 | Cone2ag0868 | Cone-Chr2:34633696 | 4.14E-35 | dispersed | |
Cone17ag0097 | Cone-Chr17:522859 | Cone20ag1310 | Cone-Chr20:8508985 | 2.40E-121 | wgd | |
Cone20ag1310 | Cone-Chr20:8508985 | Cone4ag0070 | Cone-Chr4:352109 | 9.86E-22 | wgd | |
Cone20ag1310 | Cone-Chr20:8508985 | Cone7ag0064 | Cone-Chr7:276888 | 1.82E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45661 | PF04091 | Sec15 | 7.40E-70 | CL0295 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag1310 | - | - | - | 0.0 |