Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1310 ATGCCCAAAACTCCCATCAATCAAAACCTTAGCGACAGAAATATTAACAGCACTAACAGACACGTCGGAAACGGCTCTTCCTCCCCTTCAACGACGAGCCAAGCATGTGCCGCCTGTAAATATCAACGCAGGAAGTGCGCTTCGGACTGCATTCTCGCCCCTTACTTCCCTCACCACCGCCAACGCCAGTTTCAAAACGCCCATAAGCTGTTCGGCGTCAGCAACATTACTAAGATATTGAAAGCTCTAGATCCTTTCCAGAAGGAAGAAGCCATGAGGACTATCATCTTTCAATCCGACGTTAGAGCGACGGATCCCGTTGGCGGTTGTTATAGAATCATACGTGATCTTCAACGTCAGATTGAGTACAGCAAGGCCGAGCTCGACATTGTTCTTCACCAGCTCGCCATTTGTAAAGCCCAGGCGCAACAACAGGAGCAGAATGATCATTTTCATCCCCATGATCGCGAGGAGGAGGAGGATCCTTTGCATGTTCTGTCCCAGCAGTATCATCAGTATTTGCAGCAGCAGCACTCGTTTAATCAGGAACCGTATGTTCAGATTGATCAGAATCATGATCAGATCGTCTACCATGATTTGAAGGAAGATTTGAGCAGTTTGTGGGGCATGCAGGAATCCTTGCAGTCGTCTTCTTCGATTTCGTCTACTACGTTGCATGCCAAGGAAAGTTTGTTGCCTGAGCCATGTTCGAGTATTGAAGGATATGACCTTGATCATCATCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCATCATGATCATATCAAGATTGAAGCAGCACCTGCTGATAATTACGGTGACCAGAGAAATAATCATGTCGATCAGTTGAGTTTTGAGCCTGATCATCATCATGATCAACAAAAAGATCAGTTGGCTCCCCATGAAAGGTGGTCTGTTTACGTACCCTATTTATAG 945 46.67 MPKTPINQNLSDRNINSTNRHVGNGSSSPSTTSQACAACKYQRRKCASDCILAPYFPHHRQRQFQNAHKLFGVSNITKILKALDPFQKEEAMRTIIFQSDVRATDPVGGCYRIIRDLQRQIEYSKAELDIVLHQLAICKAQAQQQEQNDHFHPHDREEEEDPLHVLSQQYHQYLQQQHSFNQEPYVQIDQNHDQIVYHDLKEDLSSLWGMQESLQSSSSISSTTLHAKESLLPEPCSSIEGYDLDHHHPPPPPPPPPPPHHHDHIKIEAAPADNYGDQRNNHVDQLSFEPDHHHDQQKDQLAPHERWSVYVPYL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8508985 8509929 - Conep20aG0135600.1 Cone20ag1310 461214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1310 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 179 - -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 284 302 - -
Cone20ag1310 314 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 235 305 - -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 1 32 - -
Cone20ag1310 314 Pfam Lateral organ boundaries (LOB) domain 35 130 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1310 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0098 Cone-Chr19:557963 Cone20ag1310 Cone-Chr20:8508985 1.04E-30 dispersed
Cone20ag1310 Cone-Chr20:8508985 Cone2ag0868 Cone-Chr2:34633696 4.14E-35 dispersed
Cone17ag0097 Cone-Chr17:522859 Cone20ag1310 Cone-Chr20:8508985 2.40E-121 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone4ag0070 Cone-Chr4:352109 9.86E-22 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone7ag0064 Cone-Chr7:276888 1.82E-21 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag0847 . 1 218 AS2 family AT1G65620 71.6 4.0e-80 295.0
Cone5ag0965 . 1 218 AS2 family AT1G65620 70.6 9.8e-79 290.4
Cone9ag1307 . 2 175 AS2 family AT1G65620 58.2 7.6e-47 184.5
Cone6ag1377 . 2 110 AS2 family AT1G65620 80.7 4.9e-46 181.8
Cone16ag0081 . 3 113 AS2 family AT1G65620 75.7 7.1e-45 177.9
Cone16ag0939 . 1 113 AS2 family AT1G65620 71.7 3.9e-43 172.2
Cone19ag0159 . 1 113 AS2 family AT1G65620 71.7 3.3e-42 169.1
Cone13ag0160 . 1 116 AS2 family AT1G65620 69.0 5.6e-42 168.3
Cone6ag1133 . 3 111 AS2 family AT1G65620 72.5 8.1e-41 164.5
Cone5ag1559 . 5 111 AS2 family AT1G65620 66.4 3.4e-39 159.1
Cone9ag1121 . 3 111 AS2 family AT1G65620 67.0 2.4e-37 152.9
Cone6ag1377 . 1 126 AS2 family AT5G66870 79.4 1.4e-52 204.1
Cone6ag1133 . 5 133 AS2 family AT5G66870 75.2 6.1e-51 198.7
Cone9ag1307 . 1 126 AS2 family AT5G66870 75.4 5.1e-50 195.7
Cone5ag1559 . 5 123 AS2 family AT5G66870 73.1 2.0e-49 193.7
Cone9ag1121 . 5 133 AS2 family AT5G66870 70.5 1.1e-47 188.0
Cone1ag0847 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone5ag0965 . 4 112 AS2 family AT5G66870 78.0 8.5e-45 178.3
Cone16ag0939 . 1 115 AS2 family AT5G66870 65.2 8.2e-40 161.8
Cone16ag0081 . 1 113 AS2 family AT5G66870 69.9 1.4e-39 161.0
Cone19ag0159 . 11 113 AS2 family AT5G66870 68.9 2.0e-38 157.1
Cone13ag0160 . 10 114 AS2 family AT5G66870 67.6 2.6e-38 156.8
Cone6ag1133 . 8 119 AS2 family AT2G23660 71.4 2.5e-44 176.8
Cone9ag1121 . 8 119 AS2 family AT2G23660 66.1 7.4e-41 165.2
Cone1ag0847 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone5ag0965 . 6 112 AS2 family AT2G23660 67.3 2.4e-39 160.2
Cone19ag0159 . 11 114 AS2 family AT2G23660 66.3 6.9e-39 158.7
Cone16ag0081 . 8 113 AS2 family AT2G23660 66.0 1.2e-38 157.9
Cone16ag0939 . 7 113 AS2 family AT2G23660 60.7 5.0e-37 152.5
Cone13ag0160 . 12 114 AS2 family AT2G23660 64.1 6.5e-37 152.1
Cone16ag0939 . 4 116 AS2 family AT3G27650 84.1 1.5e-53 206.5
Cone16ag0081 . 4 114 AS2 family AT3G27650 77.5 4.6e-47 184.9
Cone19ag0159 . 11 117 AS2 family AT3G27650 76.6 1.9e-45 179.5
Cone13ag0160 . 10 118 AS2 family AT3G27650 75.5 9.7e-45 177.2
Cone1ag0847 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone5ag0965 . 3 112 AS2 family AT3G27650 69.1 7.6e-42 167.5
Cone9ag1307 . 4 112 AS2 family AT3G27650 69.7 1.3e-41 166.8
Cone6ag1377 . 4 112 AS2 family AT3G27650 69.7 2.2e-41 166.0
Cone6ag1133 . 1 113 AS2 family AT3G27650 61.9 3.0e-38 155.6
Cone16ag0081 . 3 122 AS2 family AT5G63090 87.5 2.0e-57 219.5
Cone13ag0160 . 5 114 AS2 family AT5G63090 88.2 3.0e-53 205.7
Cone19ag0159 . 4 113 AS2 family AT5G63090 87.3 8.6e-53 204.1
Cone16ag0939 . 1 113 AS2 family AT5G63090 85.1 2.3e-50 196.1
Cone1ag0847 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone5ag0965 . 3 112 AS2 family AT5G63090 73.6 5.1e-45 178.3
Cone6ag1377 . 2 110 AS2 family AT5G63090 72.5 5.2e-42 168.3
Cone9ag1307 . 2 149 AS2 family AT5G63090 55.9 6.8e-42 167.9
Cone8ag1587 . 16 119 AS2 family AT5G63090 68.3 7.1e-39 157.9
Cone6ag1133 . 6 111 AS2 family AT5G63090 68.9 1.0e-37 154.1
Cone18ag0786 . 4 106 AS2 family AT5G63090 68.9 3.0e-37 152.5
Cone11ag0741 . 4 106 AS2 family AT5G63090 68.0 6.6e-37 151.4
Cone18ag0786 . 3 139 AS2 family AT2G30130 79.6 6.6e-56 214.5
Cone11ag0741 . 3 139 AS2 family AT2G30130 78.8 1.5e-55 213.4
Cone7ag0064 . 3 140 AS2 family AT2G30130 76.1 3.1e-53 205.7
Cone1ag1647 . 3 114 AS2 family AT2G30130 85.7 1.7e-51 199.9
Cone4ag0070 . 3 141 AS2 family AT2G30130 71.9 5.4e-50 194.9
Cone8ag1587 . 11 122 AS2 family AT2G30130 77.7 9.6e-47 184.1
Cone5ag0176 . 3 97 AS2 family AT2G30130 88.4 1.2e-44 177.2
Cone11ag1283 . 47 154 AS2 family AT2G30130 66.7 1.3e-38 157.1
Cone1ag0847 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone5ag0965 . 7 130 AS2 family AT2G30130 60.6 3.6e-38 155.6
Cone1ag1630 . 2 114 AS2 family AT2G30130 68.1 4.8e-38 155.2
Cone18ag0297 . 47 154 AS2 family AT2G30130 65.7 4.8e-38 155.2
Cone19ag0159 . 11 126 AS2 family AT2G30130 62.9 1.1e-37 154.1
Cone16ag0081 . 8 124 AS2 family AT2G30130 64.1 1.4e-37 153.7
Cone8ag1587 . 1 169 AS2 family AT1G31320 64.8 4.7e-53 204.9
Cone7ag0064 . 2 118 AS2 family AT1G31320 67.5 1.8e-44 176.4
Cone18ag0786 . 2 117 AS2 family AT1G31320 70.7 4.0e-44 175.3
Cone11ag0741 . 2 117 AS2 family AT1G31320 69.8 8.8e-44 174.1
Cone1ag1647 . 5 113 AS2 family AT1G31320 72.5 3.4e-43 172.2
Cone4ag0070 . 5 118 AS2 family AT1G31320 67.5 7.5e-43 171.0
Cone5ag0176 . 5 96 AS2 family AT1G31320 78.3 3.8e-39 158.7
Cone18ag0297 . 47 215 AS2 family AT1G31320 50.6 5.0e-39 158.3
Cone19ag0159 . 1 127 AS2 family AT1G31320 57.5 1.2e-37 153.7
Cone1ag1630 . 12 127 AS2 family AT1G31320 62.1 4.7e-37 151.8
Cone18ag0297 . 43 215 AS2 family AT2G28500 61.2 1.3e-53 207.2
Cone11ag1283 . 43 215 AS2 family AT2G28500 62.5 2.8e-53 206.1
Cone5ag0326 . 42 133 AS2 family AT2G28500 88.0 7.7e-43 171.4
Cone1ag1339 . 41 133 AS2 family AT2G28500 86.0 1.7e-42 170.2
Cone11ag1078 . 31 149 AS2 family AT2G28500 68.1 8.5e-42 167.9
Cone18ag0498 . 61 153 AS2 family AT2G28500 83.9 3.2e-41 166.0
Cone8ag1587 . 15 127 AS2 family AT2G28500 64.6 3.7e-37 152.5
Cone18ag0786 . 5 113 AS2 family AT2G28500 65.1 1.4e-36 150.6
Cone11ag1283 . 30 215 AS2 family AT1G07900 56.5 2.5e-47 186.0
Cone18ag0297 . 42 215 AS2 family AT1G07900 59.2 2.5e-47 186.0
Cone18ag0498 . 61 224 AS2 family AT1G07900 63.7 4.4e-44 175.3
Cone5ag0326 . 42 159 AS2 family AT1G07900 83.9 1.3e-43 173.7
Cone1ag1339 . 41 158 AS2 family AT1G07900 83.1 2.2e-43 172.9
Cone11ag1078 . 14 213 AS2 family AT1G07900 51.9 3.7e-43 172.2
Cone8ag1587 . 12 169 AS2 family AT1G16530 57.8 1.1e-43 173.7
Cone11ag0741 . 5 121 AS2 family AT1G16530 65.3 3.7e-39 158.7
Cone18ag0786 . 5 119 AS2 family AT1G16530 65.5 1.1e-38 157.1
Cone4ag0070 . 5 128 AS2 family AT1G16530 61.9 1.4e-38 156.8
Cone7ag0064 . 5 127 AS2 family AT1G16530 61.1 1.2e-37 153.7
Cone5ag0152 . 8 156 AS2 family AT2G30340 68.6 3.9e-54 209.1
Cone1ag1630 . 4 124 AS2 family AT2G30340 78.7 1.4e-51 200.7
Cone1ag1630 . 1 131 AS2 family AT2G40470 87.8 1.6e-60 229.9
Cone5ag0152 . 30 161 AS2 family AT2G40470 87.9 2.7e-60 229.2
Cone8ag1587 . 15 124 AS2 family AT2G40470 64.5 8.9e-40 161.0
Cone7ag0064 . 5 167 AS2 family AT2G40470 51.5 5.4e-37 151.8
Cone1ag0847 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone5ag0965 . 8 140 AS2 family AT2G40470 56.7 1.6e-36 150.2
Cone18ag0386 . 4 136 AS2 family AT3G11090 66.2 1.5e-45 179.9
Cone11ag1202 . 4 151 AS2 family AT3G11090 63.8 2.0e-45 179.5
Cone7ag1007 . 1 124 AS2 family AT2G42440 76.6 1.8e-50 196.8
Cone4ag1122 . 9 128 AS2 family AT2G42440 63.6 3.5e-38 156.0
Cone7ag1008 . 11 127 AS2 family AT2G42440 64.4 1.3e-37 154.1
Cone7ag1007 . 4 137 AS2 family AT3G58190 76.1 5.4e-54 208.4
Cone7ag1008 . 1 127 AS2 family AT3G58190 69.5 5.6e-43 171.8
Cone4ag1122 . 9 120 AS2 family AT3G58190 71.4 6.1e-42 168.3
Cone7ag1007 . 1 110 AS2 family AT2G31310 61.8 1.0e-37 154.1
Cone7ag1008 . 1 219 AS2 family AT2G42430 54.6 3.8e-56 215.7
Cone4ag1122 . 1 221 AS2 family AT2G42430 52.8 1.3e-53 207.2
Cone7ag1007 . 3 109 AS2 family AT2G42430 73.8 4.5e-41 165.6
Cone3ag0542 . 4 126 AS2 family AT2G42430 61.8 7.9e-38 154.8
Cone7ag1008 . 13 115 AS2 family AT2G45420 76.7 3.7e-41 166.0
Cone4ag1122 . 14 116 AS2 family AT2G45420 76.7 6.2e-41 165.2
Cone7ag1007 . 7 109 AS2 family AT2G45420 70.9 6.9e-40 161.8
Cone3ag0542 . 5 106 AS2 family AT2G45420 75.5 9.0e-40 161.4
Cone3ag0542 . 5 118 AS2 family AT3G03760 87.7 9.0e-51 198.0
Cone4ag1122 . 8 120 AS2 family AT3G03760 69.9 3.0e-38 156.4
Cone7ag1007 . 2 111 AS2 family AT3G03760 67.3 1.1e-37 154.5
Cone7ag1008 . 12 126 AS2 family AT3G03760 67.8 1.5e-37 154.1
Cone7ag1007 . 2 107 AS2 family AT4G00210 65.1 6.0e-37 151.8
Cone4ag1122 . 2 116 AS2 family AT4G00210 61.7 1.3e-36 150.6
Cone7ag1008 . 4 115 AS2 family AT2G45410 64.3 4.7e-38 155.2
Cone4ag1122 . 7 116 AS2 family AT2G45410 63.6 3.1e-37 152.5
Cone17ag0097 . 36 145 AS2 family AT3G13850 70.9 3.7e-41 166.0
Cone20ag1310 . 33 137 AS2 family AT3G13850 73.3 4.1e-40 162.5
Cone19ag0280 . 1 160 AS2 family AT1G68510 61.8 2.6e-54 209.5
Cone13ag0286 . 1 163 AS2 family AT1G68510 59.5 4.4e-54 208.8
Cone19ag0834 . 1 139 AS2 family AT1G68510 62.2 8.0e-48 188.0
Cone13ag0829 . 1 156 AS2 family AT1G68510 56.9 1.7e-45 180.3
Cone6ag1448 . 1 116 AS2 family AT1G68510 59.3 6.8e-39 158.3
Cone11ag0317 . 1 268 AS2 family AT1G67100 52.6 8.2e-69 257.7
Cone19ag0280 . 1 137 AS2 family AT1G67100 75.5 2.4e-60 229.6
Cone13ag0286 . 1 137 AS2 family AT1G67100 73.4 3.5e-59 225.7
Cone19ag0834 . 1 136 AS2 family AT1G67100 62.6 2.0e-46 183.3
Cone13ag0829 . 1 136 AS2 family AT1G67100 59.7 3.1e-44 176.0
Cone6ag1448 . 1 110 AS2 family AT1G67100 68.2 7.0e-44 174.9
Cone9ag1373 . 1 101 AS2 family AT1G67100 60.9 4.9e-37 152.1
Cone11ag0317 . 1 268 AS2 family AT3G02550 57.4 2.5e-74 276.2
Cone19ag0280 . 1 137 AS2 family AT3G02550 75.9 5.1e-59 225.3
Cone13ag0286 . 1 138 AS2 family AT3G02550 73.2 2.1e-57 219.9
Cone19ag0834 . 1 139 AS2 family AT3G02550 59.2 6.1e-44 175.3
Cone13ag0829 . 1 139 AS2 family AT3G02550 61.2 7.9e-44 174.9
Cone6ag1448 . 1 118 AS2 family AT3G02550 61.9 5.3e-40 162.2
Cone6ag1448 . 1 237 AS2 family AT5G67420 59.5 9.7e-68 254.2
Cone9ag1373 . 1 228 AS2 family AT5G67420 56.2 4.4e-60 228.8
Cone13ag0286 . 3 112 AS2 family AT5G67420 68.2 3.4e-44 176.0
Cone19ag0280 . 3 112 AS2 family AT5G67420 66.4 4.9e-43 172.2
Cone19ag0834 . 3 106 AS2 family AT5G67420 59.6 3.6e-38 156.0
Cone6ag1448 . 1 236 AS2 family AT3G49940 60.1 1.6e-67 253.4
Cone9ag1373 . 1 227 AS2 family AT3G49940 58.1 3.5e-62 235.7
Cone19ag0280 . 3 112 AS2 family AT3G49940 68.2 2.2e-43 173.3
Cone13ag0286 . 3 112 AS2 family AT3G49940 67.3 4.8e-43 172.2
Cone11ag0317 . 3 112 AS2 family AT3G49940 67.3 1.1e-42 171.0
Cone19ag0834 . 3 106 AS2 family AT3G49940 60.6 5.2e-37 152.1
Cone6ag1448 . 1 237 AS2 family AT4G37540 57.1 4.3e-65 245.4
Cone9ag1373 . 1 228 AS2 family AT4G37540 55.3 2.3e-58 223.0
Cone13ag0286 . 3 113 AS2 family AT4G37540 64.9 6.8e-42 168.3
Cone19ag0280 . 3 113 AS2 family AT4G37540 65.8 2.0e-41 166.8
Cone19ag0834 . 3 115 AS2 family AT4G37540 57.5 1.5e-36 150.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45661 PF04091 Sec15 7.40E-70 CL0295 Cone TF