Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1310 ATGCCCAAAACTCCCATCAATCAAAACCTTAGCGACAGAAATATTAACAGCACTAACAGACACGTCGGAAACGGCTCTTCCTCCCCTTCAACGACGAGCCAAGCATGTGCCGCCTGTAAATATCAACGCAGGAAGTGCGCTTCGGACTGCATTCTCGCCCCTTACTTCCCTCACCACCGCCAACGCCAGTTTCAAAACGCCCATAAGCTGTTCGGCGTCAGCAACATTACTAAGATATTGAAAGCTCTAGATCCTTTCCAGAAGGAAGAAGCCATGAGGACTATCATCTTTCAATCCGACGTTAGAGCGACGGATCCCGTTGGCGGTTGTTATAGAATCATACGTGATCTTCAACGTCAGATTGAGTACAGCAAGGCCGAGCTCGACATTGTTCTTCACCAGCTCGCCATTTGTAAAGCCCAGGCGCAACAACAGGAGCAGAATGATCATTTTCATCCCCATGATCGCGAGGAGGAGGAGGATCCTTTGCATGTTCTGTCCCAGCAGTATCATCAGTATTTGCAGCAGCAGCACTCGTTTAATCAGGAACCGTATGTTCAGATTGATCAGAATCATGATCAGATCGTCTACCATGATTTGAAGGAAGATTTGAGCAGTTTGTGGGGCATGCAGGAATCCTTGCAGTCGTCTTCTTCGATTTCGTCTACTACGTTGCATGCCAAGGAAAGTTTGTTGCCTGAGCCATGTTCGAGTATTGAAGGATATGACCTTGATCATCATCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCATCATGATCATATCAAGATTGAAGCAGCACCTGCTGATAATTACGGTGACCAGAGAAATAATCATGTCGATCAGTTGAGTTTTGAGCCTGATCATCATCATGATCAACAAAAAGATCAGTTGGCTCCCCATGAAAGGTGGTCTGTTTACGTACCCTATTTATAG 945 46.67 MPKTPINQNLSDRNINSTNRHVGNGSSSPSTTSQACAACKYQRRKCASDCILAPYFPHHRQRQFQNAHKLFGVSNITKILKALDPFQKEEAMRTIIFQSDVRATDPVGGCYRIIRDLQRQIEYSKAELDIVLHQLAICKAQAQQQEQNDHFHPHDREEEEDPLHVLSQQYHQYLQQQHSFNQEPYVQIDQNHDQIVYHDLKEDLSSLWGMQESLQSSSSISSTTLHAKESLLPEPCSSIEGYDLDHHHPPPPPPPPPPPHHHDHIKIEAAPADNYGDQRNNHVDQLSFEPDHHHDQQKDQLAPHERWSVYVPYL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8508985 8509929 - Conep20aG0135600.1 Cone20ag1310 461214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1310 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 179 - -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 284 302 - -
Cone20ag1310 314 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 235 305 - -
Cone20ag1310 314 MobiDBLite consensus disorder prediction 1 32 - -
Cone20ag1310 314 Pfam Lateral organ boundaries (LOB) domain 35 130 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0098 Cone-Chr19:557963 Cone20ag1310 Cone-Chr20:8508985 1.04E-30 dispersed
Cone20ag1310 Cone-Chr20:8508985 Cone2ag0868 Cone-Chr2:34633696 4.14E-35 dispersed
Cone17ag0097 Cone-Chr17:522859 Cone20ag1310 Cone-Chr20:8508985 2.40E-121 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone4ag0070 Cone-Chr4:352109 9.86E-22 wgd
Cone20ag1310 Cone-Chr20:8508985 Cone7ag0064 Cone-Chr7:276888 1.82E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45661 PF04091 Sec15 7.40E-70 CL0295 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1310 - - - 0.0