Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1318 ATGAATGTGAGAAAGGATGAGTGCTCTGTTTCACTGGATTTGTATGTCGTGTTGTTGATAAGGTTTGGAGAAGCGGCAAAGGGATTTCTGGAGTTTAATGCTTGTACGCCCCGTTGTTTGGTTAGCAAGTTTGGCTCTTCTGTAACATGTTCCTTCATGGTGGGTTTGGCACCAGAAGGATCCCAGTTTGATTCACAACAGTATGATGCTAAAATGAGTGAGATACTCTCATCTGAGGGACAGGAATTCTTCACCTCATATGATGTAGTACATGAAAATTTTGATGGTATGGGATTGCAAGAGAACCTTCAAAGGGGGATCTATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAACAAAGAGGGATTGTTCCTTTCTTCAAAGGTCTTGATGTGATCCAACAGGCTCAATATGGAACTGGAAAAACAGCAACCTTCTGCTCTGGGATCTTGCAGCAACTGGATTACAACCATGTCCAGTGCCAGGCTTTCTTTGGAGGAACTAGTGTCCGTGAAGATCAACGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCTCGCCGTGTGTTTGACATGTTGAGGAGGCAATCACTTCGCGCCGATTATATTAAGATGTTTGTCTTAGATATGGCTGACGAAATCCTTTCACGTGGTTTCAAGGATCAGCGATTGCCATCTAAAGTTCAAGTTGGGGTGTTCTCTGAAACAATGCCCCCAGAAGCTCTTGAGATCACCCGAAAATTCATGAACAAGCTGACTGGAAGCTTGAAACTCTATGTGATCTTTATGGGTCTGGCCATAACGCAAAATGTAATTTTCGTGAACACAAGGCGAAAGGTTGACTGGCTCACAGACAAGATGAGGAGCCTGGACCACACAGTATCTGCCACCCATGGTGACATAAACATGCGTGATTGTGGAGGAGCTGCCTAA 939 44.3 MNVRKDECSVSLDLYVVLLIRFGEAAKGFLEFNACTPRCLVSKFGSSVTCSFMVGLAPEGSQFDSQQYDAKMSEILSSEGQEFFTSYDVVHENFDGMGLQENLQRGIYAYGFEKPSAIQQRGIVPFFKGLDVIQQAQYGTGKTATFCSGILQQLDYNHVQCQAFFGGTSVREDQRILQAGVHVVVGTPRRVFDMLRRQSLRADYIKMFVLDMADEILSRGFKDQRLPSKVQVGVFSETMPPEALEITRKFMNKLTGSLKLYVIFMGLAITQNVIFVNTRRKVDWLTDKMRSLDHTVSATHGDINMRDCGGAA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8545884 8547535 - Conep20aG0136400.1 Cone20ag1318 461222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1318 312 SMART ultradead3 111 264 IPR014001 -
Cone20ag1318 312 Pfam DEAD/DEAH box helicase 159 242 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone20ag1318 312 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 257 IPR014001 -
Cone20ag1318 312 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 305 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cone20ag1318 312 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724(InterPro)
Cone20ag1318 312 Gene3D - 160 256 IPR027417 -
Cone20ag1318 312 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 253 IPR027417 -
Cone20ag1318 312 Gene3D - 85 159 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1318 Cone-Chr20:8545884 Cone16ag1043 Cone-Chr16:10030227 2.20E-16 dispersed
Cone17ag0089 Cone-Chr17:476974 Cone20ag1318 Cone-Chr20:8545884 2.55E-140 wgd
Cone20ag0276 Cone-Chr20:1225314 Cone20ag1318 Cone-Chr20:8545884 3.17E-81 wgd
Cone20ag1318 Cone-Chr20:8545884 Cone4ag0917 Cone-Chr4:7457400 2.41E-131 wgd
Cone20ag1318 Cone-Chr20:8545884 Cone7ag1231 Cone-Chr7:9130316 2.97E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1318 K03257 - rcu:8284700 385.956