Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1321 ATGTCAGCAGAGGATATGGATGCAGCCCTTAAAGAAGACCGGCCCCCAACCGAAGCCGAGTTGCAACAATTTTTCCTTCCGTACCGAGGATTCTGTGCTCGTAAAGGGATTGAAGCCAAGGAAGTGATACTCCATGACATAGATGTTCCGAGTGCACTTGCCGATTACATTCTAAAAAACTACATTAGCAACATTGTCGTGGGTGCTTCGAATTGCAATGCTCTTATCAGGAAGTTTAAACAACCAGATGTACCAACCAGCTTACTCAAATCAGCACCAGATTTTTGCTCAGTATATGTTATATCTAAAGGAAAAGTACAAATCAAGAGACTGCCAAATGAGCAGAACGCACATGAGGTTCACCCTCCTAGAAGTGCTGGAGCCACTCCTAAATACCCTTCTAGTCCGGACCATAATTTATATTCGCCCAGAAGTACTGCAGAGTCATACCCTTCTAGAAAAATACCATTTTCCGACACTGCTATTGACATTCCATTCCCTGAAGACATAAGGAGGCAAGTAAGTAAGATGAACCAGATCAATAAGCTTAAGCCCAGCATAACATATGATTCGATGGTAGTTTCGGGAGACAGTTTTCCTTCGGTTAGTTCCAACCATAGTTCTTCATCAAGCTATAGTGATATTTCGGGCCCATTTAGCTTTAGGTCTGCTGGAACCTCATCTGATGCATCAAACATCTCTACAGCTGAAGAGACTAGCTCTAAGAACTCTGCCTCTTCCTTATCTGCGACTCCGTCCTCTTTGGAAGCAGAAATGAGGAAATTGAGGCTCGAATTGAAACAGATCATGGAAATGTATGAATCAGCTTCCAACGAAGTTATTGTAGCAAGACAACGGGCAAGTGATATACAGCGATCGCAGACGGGCGATATGCAAAAGTTAGAGGAAGCCCGACAGGCAGAGGAGGCTGCCCGGGCATTGGTCGAGGTGGAGAAGCAGAAGACAAAGGTGGCAAGAGATGCTGCAGAAACGGCACAAAGGCTAGCGGAAATAGAGACCCAAAAGAGAAAGAAGGTGGAAAAGAAAGCCGCGGAAGGGGCAGAAGAGATGAATAAAACACAGGATTCTTCATTCTCATGGTGTAACATCCAATATAGAAGATACACTATTGATGAAATCGAACGTGCTACAGATTACTTTGAAGGTTCTTACAAGATCGGGGAAGGTGGTTATGGGCCGGTTTATAAAGGCACTCTTGATCACAGCAGTGTCGCCATAAAAGTCTTGAGGCCCGATTTATCACAAGGCCAGAAACAATTCCAACAAGAGGTGGAGGTTTTAAGCTGCATAAGGCATCCAAACATGGTTCTACTCTTAGGTGCGTGCCCAGAATACGGATGCCTTGTCTACGAGTACATGGAAAACGGAAGCTTAGAAGACCGGCTTTTCCAAAAGGACAACACTCCTCCAATCCCATGGAGAACCCGTTTCAGAATAGCTGCGGAAATAGCAACCGCCCTTCTCTTCATTCACCAAACCAAGCCCGAGCCCATCGTTCATAGAGATCTCAAACCGGCAAACATTCTCTTAGACTGGAACTATGTGAGCAAAATCGCGGATGTGGGCCTGGCTCGAATTGTTCCTGAACGCCTTTCTAACACTACTACTACTACTCAATACCACATGACGGCAGCTGCCGGAACTTTCTGTTATATCGACCCGGAGTATCAACAGAGCGGAATATTGAGTGTCAAATCGGATGTATACTCATTAGGTGTTACCTTATTGCAAATTATCACTTCCAAGAGGGCAATGGGGCTTTCTAGATTGGTTGAGGAGGGTATTGAGAATGGAACTCTTGAGCAAGTGCTTGATCCGGCTATTACCGATTGGCCTGTTGAAGCGGCCTTATCTTTTGCAAAACTAGCTTTGAGATGCTGTGAGCTTAGGAAAAGAGATAGACCGGAACTTGAAACAGAGGTTCTTCCAGAGCTTAACCGGCTCAAGAATATCGGATTAGCCGATAACTGCTCGAGTGATAGTGATAGTCTTGGTCATGAACGACCTTCCAATTCGGCCCCGCAAGTGATGTCTGCCGATGGCGATAAGGATGGAATGAAAGCTAACGTGGAAATTCAACATAGATCGATGTGA 2115 45.11 MSAEDMDAALKEDRPPTEAELQQFFLPYRGFCARKGIEAKEVILHDIDVPSALADYILKNYISNIVVGASNCNALIRKFKQPDVPTSLLKSAPDFCSVYVISKGKVQIKRLPNEQNAHEVHPPRSAGATPKYPSSPDHNLYSPRSTAESYPSRKIPFSDTAIDIPFPEDIRRQVSKMNQINKLKPSITYDSMVVSGDSFPSVSSNHSSSSSYSDISGPFSFRSAGTSSDASNISTAEETSSKNSASSLSATPSSLEAEMRKLRLELKQIMEMYESASNEVIVARQRASDIQRSQTGDMQKLEEARQAEEAARALVEVEKQKTKVARDAAETAQRLAEIETQKRKKVEKKAAEGAEEMNKTQDSSFSWCNIQYRRYTIDEIERATDYFEGSYKIGEGGYGPVYKGTLDHSSVAIKVLRPDLSQGQKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPIPWRTRFRIAAEIATALLFIHQTKPEPIVHRDLKPANILLDWNYVSKIADVGLARIVPERLSNTTTTTQYHMTAAAGTFCYIDPEYQQSGILSVKSDVYSLGVTLLQIITSKRAMGLSRLVEEGIENGTLEQVLDPAITDWPVEAALSFAKLALRCCELRKRDRPELETEVLPELNRLKNIGLADNCSSDSDSLGHERPSNSAPQVMSADGDKDGMKANVEIQHRSM 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8556448 8559163 - Conep20aG0136700.1 Cone20ag1321 461225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1321 704 SMART serkin_6 387 652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1321 704 Coils Coil 298 327 - -
Cone20ag1321 704 SUPERFAMILY Protein kinase-like (PK-like) 361 644 IPR011009 -
Cone20ag1321 704 CDD STK_N 1 104 - -
Cone20ag1321 704 Coils Coil 329 349 - -
Cone20ag1321 704 Coils Coil 259 279 - -
Cone20ag1321 704 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 359 459 - -
Cone20ag1321 704 MobiDBLite consensus disorder prediction 224 254 - -
Cone20ag1321 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1321 704 CDD STKc_IRAK 393 655 - -
Cone20ag1321 704 Gene3D Phosphorylase Kinase; domain 1 356 459 - -
Cone20ag1321 704 FunFam Os07g0541700 protein 460 550 - -
Cone20ag1321 704 Gene3D Transferase(Phosphotransferase) domain 1 460 668 - -
Cone20ag1321 704 MobiDBLite consensus disorder prediction 135 153 - -
Cone20ag1321 704 Pfam Protein tyrosine and serine/threonine kinase 391 645 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1321 704 MobiDBLite consensus disorder prediction 665 684 - -
Cone20ag1321 704 ProSiteProfiles Protein kinase domain profile. 387 652 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1321 704 PANTHER OS02G0152300 PROTEIN 8 660 IPR051348 -
Cone20ag1321 704 MobiDBLite consensus disorder prediction 665 704 - -
Cone20ag1321 704 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1321 Cone-Chr20:8556448 Cone20ag1403 Cone-Chr20:8955612 9.97E-168 dispersed
Cone17ag0083 Cone-Chr17:463705 Cone20ag1321 Cone-Chr20:8556448 0 wgd
Cone20ag0278 Cone-Chr20:1246104 Cone20ag1321 Cone-Chr20:8556448 3.02E-191 wgd
Cone20ag1321 Cone-Chr20:8556448 Cone4ag0052 Cone-Chr4:270922 2.66E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82578 PF00225 Kinesin 7.30E-102 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1321 - - - 0.0