Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1368 ATGACATGGACCAGGCTCGATGGAATGAGCAAGTGGGGTAATATTTGGAGGCTATTCAAGACAATTGAAGAAGCGGTGAGTGCAGTGTCGGAGAGGAGGAAAGAGAGATTTGTGATATATGTGGAGAATGTGGAAATCGATAAGAATAAGTGGAATGTGATTATCTATAGTGATAGGAAGAGTATGAGCATTGTTTCCGGCAATTTGAACCATGTGGACGGCACTGGAATAACTTCTGAATCTAAAGTATCAGTAGGAATATCTGAGTCTGAAATGGTACAAGAGATAGTTATGGTTTCTGGAATTTGGTCAATGTCTGAGTTTCTTAGTCTACTCACTAGTGACAGCAATGAGTCGAAACACGGGAGGCGTTTACTAGGGCGGTTCGAAACGACATCATTAAAACATGACATGGACTGGCCTCTATGGATGAGCAAGTTGGGTGGTATTCGGAGACTATTAGAGGAGGACAACTTGAAGCCAGATGTGGTGGTGGCCAAGGATGGAAGCGGGAACTTTAAAAGAACTGAAAAAGCGATAGCGGCAGTGCCGGAGAAGAGTAACCAGAGATTTATGATATATGTGAAAGAAGGTGTTTATGAGGAGGTTGTGTTGGTACATAAGAAAAAATGGAATGTGGTGATTTATGGCGATGGGAAGAATAGGAGCATTGTTTCCGCCGGATTGAACTATGCCGACGGCACTAAAACCTACGCCTCTGCTACTTTTGGTGTGTCGGGGCAAGGTCTTATTGCAAAATATATGGGCTTTATTAACGCAGTCGGCCTAGAAAAGGGTAAAGCAGTGGCATTCAGGTCTGATTCAGACATATCAGTATTTTACAGATGCTCATTCGATGGCTTCCAATACACCCTCTATGCTCATACAAATCGACAGTTCTATAGAGACTGTAACATAATCGGAACCGTCGGCTTCATTTTCGGTTACGCTGCCCTCTTGTTCCAGAACTGTAGAATCATGCCCAGACAAGCCCTCCCTAAACAAGACATCACCATCACAGCTCAAGGCAATACTAACCAGAATCATAGCGGAGGCACTTCAATCCAGAGATGTACGATTATGCCCCTCCCTGGAGACAATGTCATGGTGCCCACTTATTTGGGCCGGCCTTGA 1134 44.27 MTWTRLDGMSKWGNIWRLFKTIEEAVSAVSERRKERFVIYVENVEIDKNKWNVIIYSDRKSMSIVSGNLNHVDGTGITSESKVSVGISESEMVQEIVMVSGIWSMSEFLSLLTSDSNESKHGRRLLGRFETTSLKHDMDWPLWMSKLGGIRRLLEEDNLKPDVVVAKDGSGNFKRTEKAIAAVPEKSNQRFMIYVKEGVYEEVVLVHKKKWNVVIYGDGKNRSIVSAGLNYADGTKTYASATFGVSGQGLIAKYMGFINAVGLEKGKAVAFRSDSDISVFYRCSFDGFQYTLYAHTNRQFYRDCNIIGTVGFIFGYAALLFQNCRIMPRQALPKQDITITAQGNTNQNHSGGTSIQRCTIMPLPGDNVMVPTYLGRP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8762971 8764481 - Conep20aG0141500.1 Cone20ag1368 461272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1368 377 SUPERFAMILY Pectin lyase-like 160 377 IPR011050 -
Cone20ag1368 377 Gene3D - 16 101 IPR012334 -
Cone20ag1368 377 Gene3D - 156 377 IPR012334 -
Cone20ag1368 377 SUPERFAMILY Pectin lyase-like 19 82 IPR011050 -
Cone20ag1368 377 Pfam Pectinesterase 19 96 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone20ag1368 377 Pfam Pectinesterase 162 377 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone20ag1368 377 FunFam Putative pectinesterase 57 159 358 - -
Cone20ag1368 377 PANTHER PECTINESTERASE 19 75 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1368 Cone-Chr20:8762971 Cone4ag0894 Cone-Chr4:6621834 1.63E-67 dispersed
Cone17ag0034 Cone-Chr17:222144 Cone20ag1368 Cone-Chr20:8762971 2.23E-133 wgd
Cone20ag1368 Cone-Chr20:8762971 Cone4ag0890 Cone-Chr4:6423977 1.68E-88 wgd
Cone20ag1368 Cone-Chr20:8762971 Cone7ag0832 Cone-Chr7:6238440 6.81E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1368 - - - 0.0