Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1370 ATGGCTCACCTTAAGGAGTACATGAAAAAGAAGAAGCTCTTCTTAGCTTCACTTTCCACTCTACTCCTCGTCGCAGTCATAATCGGAATCGTCGCCGGAGTCTGCAACTCTAGTGGGACAAGTTCCGACAACTCTCCAGCCCATTCCGTCGTCAAAAACTCATGCAGCTCCACCCTGTACCCTACTCTATGCTACTCCACCATTTCCTCCAACCTCGACGCAACCACAAAACCCATCTCCACCAAGAAAGACGTTATAGAACTCGCCATAAACATCACGACAAAAGTCGTCCAACAAAACTACTTCACCATCAAGAAGCTTACTACACTCACGAACCTGACCAAGAGAGAGAAATCCGCTCTCCACGACTGCCTCGAGACCATAGACGAAACCCTAGACGAGCTCCATAAAGCCGTCGTGGACCTCCACGACTACCCTAGTAGCCCTAACAACAAGTCCATAACCCAACACGCAGAAGATCTCAAGACATTGCTAAGCTCTGCCATTACTAACCAAGAGACTTGCTTGGACGGGTTCTCGCATGATGAAGCTGATAAGAAGCTACGTAAGAGATTGATCAAAGGTCAGGTTCATGTTGAGAAGCTGTGTAGTAATGCATTGGCTATGGTTAAGAACATGACTGATACTGATGCGGCCAATTATGAGACTGTTAATAATAAGATAAACAGGAAGCTGCTTAACGAGGAGGAGGAGGAGGAGGAGAAGGGTGTCAAGTGGCCGGAGTGGTTGTCGGCAGCTGACAGGAGGCTTTTGCAGTCTACATCGGTGACACCGAATGTGGTGGTGGCAGCGGATGGGAGCGGGAATTACCTGACGGTGGCGGCAGCAGTGGCGGCAGCACCTACAGGGAGTAGCAGCCGATATGTGATTAGAATTAAGGCAGGAGTTTATAGAGAGAACGTCGAGGTGCCTAAGAATAAGATTAACATAATGTTTTTGGGTGATGGAAGAACCTCTACTATCATTACTGGAAGTAGGAATGTGGTTGATGGCAGCACAACCTTCAATTCTGCAACTGTTGCCGTGGTGGGAGAGAGATTTCTAGCTCGAGACATTACCTTCCAGAACACAGCGGGTCCCTCCAAGCACCAAGCAGTAGCACTACGTGTCGGCTCAGACCTCTCCGCCTTCTACCGCTGCGACATGTTGGCATACCAAGACACCCTCTACGTCCACTCCAACCGACAGTTTTACACCGCCTGCTTCATCGCCGGCACAGTCGACTTCATCTTCGGCAATGCCGCTGCCGTTTTGCAAAACTGCGACATCCACGCGCGGAGACCCAATGCCGGCCAGAAGAACATGGTCACGGCCCAAGGTCGGACTGACCCAAACCAAAACACAGGGATTGTCATCCAGAAAAGTAGAATCGGTGCCACGTCGGATTTGCTGCCGGTCCAGAGTAGCTTCCCGACGTATCTAGGCAGACCGTGGAAAGAGTACTCGCGAACCGTGGTCATGCAAACGGCGATTAGCAACGTCATTAATCCGGCTGGGTGGTTCGAGTGGTCTGGGACGTTTGCGCTCGACACGTTGTTTTATGGAGAGTATCAGAACACAGGGGCAGGTGCCGACACGTCACAAAGAGTTACGTGGAAGGGGTTTAAGGTAATTACAAGTGCATCCGAGGCTCAGGCTTATACTCCTGGTAGCTTCATTGCTGGTGGGAGCTGGTTGAGTTCTACTGGTTTTCCTTTCTCTCTTGGTCTCTGA 1734 50.46 MAHLKEYMKKKKLFLASLSTLLLVAVIIGIVAGVCNSSGTSSDNSPAHSVVKNSCSSTLYPTLCYSTISSNLDATTKPISTKKDVIELAINITTKVVQQNYFTIKKLTTLTNLTKREKSALHDCLETIDETLDELHKAVVDLHDYPSSPNNKSITQHAEDLKTLLSSAITNQETCLDGFSHDEADKKLRKRLIKGQVHVEKLCSNALAMVKNMTDTDAANYETVNNKINRKLLNEEEEEEEKGVKWPEWLSAADRRLLQSTSVTPNVVVAADGSGNYLTVAAAVAAAPTGSSSRYVIRIKAGVYRENVEVPKNKINIMFLGDGRTSTIITGSRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYTACFIAGTVDFIFGNAAAVLQNCDIHARRPNAGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLLPVQSSFPTYLGRPWKEYSRTVVMQTAISNVINPAGWFEWSGTFALDTLFYGEYQNTGAGADTSQRVTWKGFKVITSASEAQAYTPGSFIAGGSWLSSTGFPFSLGL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8765996 8769346 - Conep20aG0141700.1 Cone20ag1370 461274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1370 577 Pfam Plant invertase/pectin methylesterase inhibitor 50 209 IPR006501 GO:0004857(InterPro)
Cone20ag1370 577 SMART PMEI_2 46 209 IPR006501 GO:0004857(InterPro)
Cone20ag1370 577 FunFam Pectinesterase 47 214 - -
Cone20ag1370 577 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Cone20ag1370 577 Gene3D - 260 577 IPR012334 -
Cone20ag1370 577 FunFam Pectinesterase 260 577 - -
Cone20ag1370 577 Pfam Pectinesterase 266 562 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone20ag1370 577 Coils Coil 218 241 - -
Cone20ag1370 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 214 IPR035513 -
Cone20ag1370 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 214 IPR035513 -
Cone20ag1370 577 SUPERFAMILY Pectin lyase-like 263 576 IPR011050 -
Cone20ag1370 577 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Cone20ag1370 577 PANTHER PECTINESTERASE 13 568 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone20ag1370 577 NCBIfam pectinesterase inhibitor domain 23 213 IPR006501 GO:0004857(InterPro)
Cone20ag1370 577 CDD PMEI-like_3 54 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0960 Cone-Chr20:6865051 Cone20ag1370 Cone-Chr20:8765996 2.05E-172 dispersed
Cone20ag1370 Cone-Chr20:8765996 Cone7ag0832 Cone-Chr7:6238440 1.32E-296 dispersed
Cone9ag0701 Cone-Chr9:3376043 Cone20ag1370 Cone-Chr20:8765996 2.21E-14 dispersed
Cone17ag0033 Cone-Chr17:214851 Cone20ag1370 Cone-Chr20:8765996 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1370 K01051 - mdm:103403339 822.387