Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag1372 | ATGAAGGGTTGGAAATGGAGGGGGGTTTTGTTTCAGTTGAGCATTCACATTTTGTGGTGGAAGCCCAGTTCCATCAATGCAGAAACGGATCCAAATGATGCTCAGCTTTCCGATTCCGGCCTGGCAAGTTTCACGAAAAATGTGGATCTGAGTGCTGGATTTGGATACAATGCTCCTGAGATCACAATGTGTGCTCAATATACTCTCAAAAGTGACGTATATAGTTTTGGCATAGTCATGTTAGAGCTGCTCACTGGACGTAAACCGTATGATAGTTCAAGGGTAAGACCTGAGCAATCTTTGGTTTGGTGGGCGACACCTCAACTCCATGACATTGATGCTTTGGAAAAAATGGTTGATCCCACACTTAAAGGGATCTACCCTGTTAAGTCTCTCTCCCGTTTCGCCGATGTAATTGCTCACCCTGTTAAGTCTCTCTCCCGTTTTGCCGATCCGGAGCCTGAATTTCGACCTCCTATGTCGGAAGTAGTACAGGCACTGGTCTGGTTCATTGCAACGAGCTAA | 525 | 45.9 | MKGWKWRGVLFQLSIHILWWKPSSINAETDPNDAQLSDSGLASFTKNVDLSAGFGYNAPEITMCAQYTLKSDVYSFGIVMLELLTGRKPYDSSRVRPEQSLVWWATPQLHDIDALEKMVDPTLKGIYPVKSLSRFADVIAHPVKSLSRFADPEPEFRPPMSEVVQALVWFIATS | 174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 8777652 | 8778572 | - | Conep20aG0141900.1 | Cone20ag1372 | 461276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag1372 | 174 | Pfam | Protein kinase domain | 31 | 99 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cone20ag1372 | 174 | SUPERFAMILY | Protein kinase-like (PK-like) | 32 | 168 | IPR011009 | - | |
| Cone20ag1372 | 174 | PANTHER | OS01G0750732 PROTEIN | 32 | 167 | IPR050885 | - | |
| Cone20ag1372 | 174 | Gene3D | Transferase(Phosphotransferase) domain 1 | 19 | 172 | - | - | |
| Cone20ag1372 | 174 | ProSiteProfiles | Protein kinase domain profile. | 1 | 170 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag1372 | Cone-Chr20:8777652 | Cone4ag0853 | Cone-Chr4:5700963 | 5.48E-58 | dispersed | |
| Cone17ag0031 | Cone-Chr17:205759 | Cone20ag1372 | Cone-Chr20:8777652 | 4.95E-71 | wgd | |
| Cone20ag1372 | Cone-Chr20:8777652 | Cone4ag0869 | Cone-Chr4:6042321 | 3.68E-47 | wgd | |
| Cone20ag1372 | Cone-Chr20:8777652 | Cone7ag0827 | Cone-Chr7:6173636 | 5.34E-59 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 82580 | PF13041 | PPR_2 | 5.10E-15 | CL0020 | Cone | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag1372 | - | - | - | 0.0 |