Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag1377 | ATGGGATCCATAGAGCAGAAAGCAGACCTGGAATCTGACGAGAAGGTCCTTCTTGGTTCATCAACATCCCCCAGAAAAGGGCTTGTCTTTGATTTTGAGACGATTCATGTACATTCACGTTCAGATTCATTCAACTCGTGGACTTCTAAGCATATAAGGAGAGGACCTTTTCGTAGTGTTTATTATGTCTTAATTAAAGCGAAGATCAACATGTTGCTACCCTTTGGTCCACTGGCGATTTTGCTGCATTATTTAACTGGAAAACACGTTGGATGGGTGTTCTTCTTCACATTATTGGGAATCATTCCTTTGGCAGAGCGCCTGGGTTATGCAACTGAGCAGCTAGCGTTCTACACGGGCCCGACAGTTGGAGGTCTCTTGAATGCTACATTTGGAAATGCAACGGAGATGATTATATCAATATATGCATTGAAAATGGGGATGACTAGGGTTGTTCAGCAATCTTTACTAGGGTCAATCTTGTCGAACATGCTTCTAGTGCTTGGTTGTGCCTTCTTCACTGGCGGGATCACTCATTATGAGAAGAATCAGACTTTCAATAAGGCAGCTGCCCTTGTGAATTCTGGATTGCTATTGATGGCCGTAATGGGATTAATGTTTCCTGCTGTGCTTCATTTTACTCACTCCGAGGTGCATTTTGGGAAGTCAGAGTTAGCACTTTCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAACACAAGCTTAGTGAGTCCACTGACATGGAAAGAGACAATAATGAAGATTCAGATGATGAAGAGGCTCCTGAGATAACTCAGTGGGAAGCAATAGGATGGCTGGCTATTTTGACTGTCTGGGTGTCGATCTTATCCGGATACCTAGTTGACGCTATTCAGGGAGCATCCGACTCTCTAAACATGCCGGTGGCTTTTATTAGTGTCATCTTACTTCCAATTGTCGGTAATGCTGCCGAGCATGCCAGTGCTATTATGTTTGCAATGAAAGATAAGCTTGACATCACACTTGGAGTTGCTATTGGATCATCTACCCAAATATCTATGTTTGTGATTCCATTCTGTGTAGTCATCGGGTGGTTCATGGGAACACCAATGGACTTGAATTTTCAACTTTTTGAGACTGCTACTCTGTTCATCACTGTGATTGTGGTGGCTTTTATGTTGCAGGAAGGGACATCAAACTATTTTAAAGGCTTGATGCTTTTATTATGCTATCTCATCGTAGCAGCAAGTTTCTTCGTCCACATTGACCCTGCTGACGATGGAAATTAA | 1302 | 42.32 | MGSIEQKADLESDEKVLLGSSTSPRKGLVFDFETIHVHSRSDSFNSWTSKHIRRGPFRSVYYVLIKAKINMLLPFGPLAILLHYLTGKHVGWVFFFTLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKMGMTRVVQQSLLGSILSNMLLVLGCAFFTGGITHYEKNQTFNKAAALVNSGLLLMAVMGLMFPAVLHFTHSEVHFGKSELALSRFSSCIMLVAYASYLFFQLKSQHKLSESTDMERDNNEDSDDEEAPEITQWEAIGWLAILTVWVSILSGYLVDAIQGASDSLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWFMGTPMDLNFQLFETATLFITVIVVAFMLQEGTSNYFKGLMLLLCYLIVAASFFVHIDPADDGN | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 8792808 | 8797686 | - | Conep20aG0142400.1 | Cone20ag1377 | 461281 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag1377 | 433 | Pfam | Sodium/calcium exchanger protein | 280 | 422 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone20ag1377 | 433 | Pfam | Sodium/calcium exchanger protein | 92 | 247 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cone20ag1377 | 433 | NCBIfam | calcium/proton exchanger | 72 | 423 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Cone20ag1377 | 433 | Gene3D | - | 121 | 258 | IPR044880 | - | |
Cone20ag1377 | 433 | Gene3D | - | 268 | 424 | IPR044880 | - | |
Cone20ag1377 | 433 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 26 | 428 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Cone20ag1377 | 433 | FunFam | Vacuolar cation/proton exchanger | 121 | 260 | - | - | |
Cone20ag1377 | 433 | FunFam | Vacuolar cation/proton exchanger | 268 | 424 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0385 | Cone-Chr10:1817511 | Cone20ag1377 | Cone-Chr20:8792808 | 2.11E-113 | dispersed | |
Cone20ag1377 | Cone-Chr20:8792808 | Cone8ag1353 | Cone-Chr8:10849714 | 3.18E-188 | dispersed | |
Cone17ag0026 | Cone-Chr17:185953 | Cone20ag1377 | Cone-Chr20:8792808 | 8.58E-303 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag1377 | K07300 | - | mdm:103405205 | 694.501 |