Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1377 ATGGGATCCATAGAGCAGAAAGCAGACCTGGAATCTGACGAGAAGGTCCTTCTTGGTTCATCAACATCCCCCAGAAAAGGGCTTGTCTTTGATTTTGAGACGATTCATGTACATTCACGTTCAGATTCATTCAACTCGTGGACTTCTAAGCATATAAGGAGAGGACCTTTTCGTAGTGTTTATTATGTCTTAATTAAAGCGAAGATCAACATGTTGCTACCCTTTGGTCCACTGGCGATTTTGCTGCATTATTTAACTGGAAAACACGTTGGATGGGTGTTCTTCTTCACATTATTGGGAATCATTCCTTTGGCAGAGCGCCTGGGTTATGCAACTGAGCAGCTAGCGTTCTACACGGGCCCGACAGTTGGAGGTCTCTTGAATGCTACATTTGGAAATGCAACGGAGATGATTATATCAATATATGCATTGAAAATGGGGATGACTAGGGTTGTTCAGCAATCTTTACTAGGGTCAATCTTGTCGAACATGCTTCTAGTGCTTGGTTGTGCCTTCTTCACTGGCGGGATCACTCATTATGAGAAGAATCAGACTTTCAATAAGGCAGCTGCCCTTGTGAATTCTGGATTGCTATTGATGGCCGTAATGGGATTAATGTTTCCTGCTGTGCTTCATTTTACTCACTCCGAGGTGCATTTTGGGAAGTCAGAGTTAGCACTTTCAAGATTTAGCAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAAAAGTCAACACAAGCTTAGTGAGTCCACTGACATGGAAAGAGACAATAATGAAGATTCAGATGATGAAGAGGCTCCTGAGATAACTCAGTGGGAAGCAATAGGATGGCTGGCTATTTTGACTGTCTGGGTGTCGATCTTATCCGGATACCTAGTTGACGCTATTCAGGGAGCATCCGACTCTCTAAACATGCCGGTGGCTTTTATTAGTGTCATCTTACTTCCAATTGTCGGTAATGCTGCCGAGCATGCCAGTGCTATTATGTTTGCAATGAAAGATAAGCTTGACATCACACTTGGAGTTGCTATTGGATCATCTACCCAAATATCTATGTTTGTGATTCCATTCTGTGTAGTCATCGGGTGGTTCATGGGAACACCAATGGACTTGAATTTTCAACTTTTTGAGACTGCTACTCTGTTCATCACTGTGATTGTGGTGGCTTTTATGTTGCAGGAAGGGACATCAAACTATTTTAAAGGCTTGATGCTTTTATTATGCTATCTCATCGTAGCAGCAAGTTTCTTCGTCCACATTGACCCTGCTGACGATGGAAATTAA 1302 42.32 MGSIEQKADLESDEKVLLGSSTSPRKGLVFDFETIHVHSRSDSFNSWTSKHIRRGPFRSVYYVLIKAKINMLLPFGPLAILLHYLTGKHVGWVFFFTLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKMGMTRVVQQSLLGSILSNMLLVLGCAFFTGGITHYEKNQTFNKAAALVNSGLLLMAVMGLMFPAVLHFTHSEVHFGKSELALSRFSSCIMLVAYASYLFFQLKSQHKLSESTDMERDNNEDSDDEEAPEITQWEAIGWLAILTVWVSILSGYLVDAIQGASDSLNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWFMGTPMDLNFQLFETATLFITVIVVAFMLQEGTSNYFKGLMLLLCYLIVAASFFVHIDPADDGN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8792808 8797686 - Conep20aG0142400.1 Cone20ag1377 461281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1377 433 Pfam Sodium/calcium exchanger protein 280 422 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1377 433 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag1377 433 NCBIfam calcium/proton exchanger 72 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cone20ag1377 433 Gene3D - 121 258 IPR044880 -
Cone20ag1377 433 Gene3D - 268 424 IPR044880 -
Cone20ag1377 433 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 428 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cone20ag1377 433 FunFam Vacuolar cation/proton exchanger 121 260 - -
Cone20ag1377 433 FunFam Vacuolar cation/proton exchanger 268 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0385 Cone-Chr10:1817511 Cone20ag1377 Cone-Chr20:8792808 2.11E-113 dispersed
Cone20ag1377 Cone-Chr20:8792808 Cone8ag1353 Cone-Chr8:10849714 3.18E-188 dispersed
Cone17ag0026 Cone-Chr17:185953 Cone20ag1377 Cone-Chr20:8792808 8.58E-303 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1377 K07300 - mdm:103405205 694.501