Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1378 ATGAGGCCGATTCCACCGCCTGCCGTGGCGGCGACCAACGCCAACTCATCAAACACTACGCGAAATCGACAGCGTCGGCGTCCAGACTTAACTCTTCCTCTTCCACAGAGAGACCCTAACCTGGCGGTGCCGCTTCCTCTGCCTCCCACCAGCTGCCCCGCAGCGCCACCGTCTACGAATCACCATGGTCAGAGTAACTCGGCCGCTGCGCATCAGCTCCAGCTCAACTTCTCCGAGCTGGAGCGAGCTAATCGAATCGGAAGCGGAAGCGGAGGCACGGTCTACAAGGTGATTCATCGACCTAGTGGTCGTCTCTACGCTCTCAAGGTGATTTACGGACACCATGAGGACTCTGTGAGGCGCCAGATCTGCAGAGAGATCGAGATCCTACGCGACGTGGATAACCCTAATGTGGTCAGGTGCCATGATATGTTCGACCACAACGGAGAAATCCAGGTCCTCTTGGAATTCATGGATGGAGGCTCCTTGGAAGGCTTCCACATCGCTAACGAGCAGCATCTCTCGGATCTAACGCGACAGATTCTCACTGGACTTGCCTATCTCCATCGCCGCCACATCGTTCACCGGGATATCAAGCCTTCTAACCTTCTAATCAACGCTCGCAAGCAGGTTAAGATCGCCGACTTTGGAGTGAGCCGGATTCTGGCGCAGACCATGGATCCTTGCAACTCATCGGTAGGGACAATTGCGTACATGAGTCCAGAGAGAATCAACACAGATCTAAACCAGGGCCAGTACGATGGATATGCTGGAGACATATGGAGTCTGGGAGTGAGCATATTGGAGTTCTATTTGGGGAGGTTTCCATTTGCGGTCGGGAGGCAGGGAGATTGGGCGAGCTTGATGTGTGCGATTTGTATGTCGCAGCCACCAGAAGCGCCGCCTACTGCATCACCCGAGTTCCGGCACTTCATTGCTTGCTGTCTGCAGAGAGAACCAGGGAGGAGATGGACTGCTGCTCGGTTGCTGCAACATCCATTCATAACACTGCACAGTGGGAGTGGGAATGGAGTCAACCATAGCCAGAATCACCAGGTTTATCATCATCAGAATCTCCGCCAATTGTTACCTCCTCCACGCCCACATCCTTCCTCCTGGCCCTTTTAG 1128 54.43 MRPIPPPAVAATNANSSNTTRNRQRRRPDLTLPLPQRDPNLAVPLPLPPTSCPAAPPSTNHHGQSNSAAAHQLQLNFSELERANRIGSGSGGTVYKVIHRPSGRLYALKVIYGHHEDSVRRQICREIEILRDVDNPNVVRCHDMFDHNGEIQVLLEFMDGGSLEGFHIANEQHLSDLTRQILTGLAYLHRRHIVHRDIKPSNLLINARKQVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNQGQYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASPEFRHFIACCLQREPGRRWTAARLLQHPFITLHSGSGNGVNHSQNHQVYHHQNLRQLLPPPRPHPSSWPF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8798189 8800574 - Conep20aG0142500.1 Cone20ag1378 461282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1378 375 SUPERFAMILY Protein kinase-like (PK-like) 79 336 IPR011009 -
Cone20ag1378 375 MobiDBLite consensus disorder prediction 39 55 - -
Cone20ag1378 375 FunFam Mitogen-activated protein kinase 2 61 159 - -
Cone20ag1378 375 Pfam Protein kinase domain 82 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 CDD PKc_MAPKK_plant_like 78 336 - -
Cone20ag1378 375 FunFam Mitogen-activated protein kinase 2 160 346 - -
Cone20ag1378 375 MobiDBLite consensus disorder prediction 1 69 - -
Cone20ag1378 375 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 69 339 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone20ag1378 375 SMART serkin_6 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524(InterPro)
Cone20ag1378 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 Gene3D Transferase(Phosphotransferase) domain 1 160 357 - -
Cone20ag1378 375 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1378 Cone-Chr20:8798189 Cone3ag0716 Cone-Chr3:3670629 2.25E-49 dispersed
Cone2ag0738 Cone-Chr2:33145279 Cone20ag1378 Cone-Chr20:8798189 1.87E-99 transposed
Cone17ag0025 Cone-Chr17:183156 Cone20ag1378 Cone-Chr20:8798189 7.37E-228 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone4ag0888 Cone-Chr4:6361613 3.54E-172 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone7ag0824 Cone-Chr7:6143218 4.21E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82581 PF00271 Helicase_C 3.60E-10 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1378 K13413 - mdm:103443229 513.457