Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1378 ATGAGGCCGATTCCACCGCCTGCCGTGGCGGCGACCAACGCCAACTCATCAAACACTACGCGAAATCGACAGCGTCGGCGTCCAGACTTAACTCTTCCTCTTCCACAGAGAGACCCTAACCTGGCGGTGCCGCTTCCTCTGCCTCCCACCAGCTGCCCCGCAGCGCCACCGTCTACGAATCACCATGGTCAGAGTAACTCGGCCGCTGCGCATCAGCTCCAGCTCAACTTCTCCGAGCTGGAGCGAGCTAATCGAATCGGAAGCGGAAGCGGAGGCACGGTCTACAAGGTGATTCATCGACCTAGTGGTCGTCTCTACGCTCTCAAGGTGATTTACGGACACCATGAGGACTCTGTGAGGCGCCAGATCTGCAGAGAGATCGAGATCCTACGCGACGTGGATAACCCTAATGTGGTCAGGTGCCATGATATGTTCGACCACAACGGAGAAATCCAGGTCCTCTTGGAATTCATGGATGGAGGCTCCTTGGAAGGCTTCCACATCGCTAACGAGCAGCATCTCTCGGATCTAACGCGACAGATTCTCACTGGACTTGCCTATCTCCATCGCCGCCACATCGTTCACCGGGATATCAAGCCTTCTAACCTTCTAATCAACGCTCGCAAGCAGGTTAAGATCGCCGACTTTGGAGTGAGCCGGATTCTGGCGCAGACCATGGATCCTTGCAACTCATCGGTAGGGACAATTGCGTACATGAGTCCAGAGAGAATCAACACAGATCTAAACCAGGGCCAGTACGATGGATATGCTGGAGACATATGGAGTCTGGGAGTGAGCATATTGGAGTTCTATTTGGGGAGGTTTCCATTTGCGGTCGGGAGGCAGGGAGATTGGGCGAGCTTGATGTGTGCGATTTGTATGTCGCAGCCACCAGAAGCGCCGCCTACTGCATCACCCGAGTTCCGGCACTTCATTGCTTGCTGTCTGCAGAGAGAACCAGGGAGGAGATGGACTGCTGCTCGGTTGCTGCAACATCCATTCATAACACTGCACAGTGGGAGTGGGAATGGAGTCAACCATAGCCAGAATCACCAGGTTTATCATCATCAGAATCTCCGCCAATTGTTACCTCCTCCACGCCCACATCCTTCCTCCTGGCCCTTTTAG 1128 54.43 MRPIPPPAVAATNANSSNTTRNRQRRRPDLTLPLPQRDPNLAVPLPLPPTSCPAAPPSTNHHGQSNSAAAHQLQLNFSELERANRIGSGSGGTVYKVIHRPSGRLYALKVIYGHHEDSVRRQICREIEILRDVDNPNVVRCHDMFDHNGEIQVLLEFMDGGSLEGFHIANEQHLSDLTRQILTGLAYLHRRHIVHRDIKPSNLLINARKQVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNQGQYDGYAGDIWSLGVSILEFYLGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASPEFRHFIACCLQREPGRRWTAARLLQHPFITLHSGSGNGVNHSQNHQVYHHQNLRQLLPPPRPHPSSWPF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8798189 8800574 - Conep20aG0142500.1 Cone20ag1378 461282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1378 375 SUPERFAMILY Protein kinase-like (PK-like) 79 336 IPR011009 -
Cone20ag1378 375 MobiDBLite consensus disorder prediction 39 55 - -
Cone20ag1378 375 FunFam Mitogen-activated protein kinase 2 61 159 - -
Cone20ag1378 375 Pfam Protein kinase domain 82 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 CDD PKc_MAPKK_plant_like 78 336 - -
Cone20ag1378 375 FunFam Mitogen-activated protein kinase 2 160 346 - -
Cone20ag1378 375 MobiDBLite consensus disorder prediction 1 69 - -
Cone20ag1378 375 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 69 339 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cone20ag1378 375 SMART serkin_6 80 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524(InterPro)
Cone20ag1378 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1378 375 Gene3D Transferase(Phosphotransferase) domain 1 160 357 - -
Cone20ag1378 375 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1378 K13413 - - mdm:103443229 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1378 Cone-Chr20:8798189 Cone3ag0716 Cone-Chr3:3670629 2.25E-49 dispersed
Cone2ag0738 Cone-Chr2:33145279 Cone20ag1378 Cone-Chr20:8798189 1.87E-99 transposed
Cone17ag0025 Cone-Chr17:183156 Cone20ag1378 Cone-Chr20:8798189 7.37E-228 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone4ag0888 Cone-Chr4:6361613 3.54E-172 wgd
Cone20ag1378 Cone-Chr20:8798189 Cone7ag0824 Cone-Chr7:6143218 4.21E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g955 . . . . . . Bma10g00703 . . . . . . Car14g01085 . . . . . . . . . . Cla07g01350 Cam07g1143 Cec07g1538 Cco07g1499 Clacu07g1422 Cmu07g1398 Cre07g1779 Cone20ag1378 . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01040 . . . . . . . . . . . . . . Lsi07g00631 Csa03g02812 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0048 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.7 2.9e-131 465.7
Cone7ag0046 . 27 353 MAP Kinase Kinase Gene Family AT4G26070 69.4 6.5e-131 464.5
Cone7ag0750 . 20 351 MAP Kinase Kinase Gene Family AT4G26070 62.2 2.1e-121 433.0
Cone7ag1164 . 29 355 MAP Kinase Kinase Gene Family AT4G26070 56.1 3.1e-109 392.5
Cone4ag0048 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 1.1e-135 480.3
Cone7ag0046 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 6.9e-133 471.1
Cone7ag0750 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 1.8e-120 429.9
Cone7ag1164 . 10 328 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.8e-109 393.3
Cone3ag0716 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.3e-223 773.1
Cone10ag0698 . 31 516 MAP Kinase Kinase Gene Family AT5G40440 76.5 1.2e-221 766.5
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT1G51660 74.5 8.4e-145 510.8
Cone17ag0025 . 76 362 MAP Kinase Kinase Gene Family AT1G51660 81.2 6.1e-135 478.0
Cone7ag0824 . 22 329 MAP Kinase Kinase Gene Family AT1G51660 73.6 9.4e-128 454.1
Cone4ag0888 . 1 368 MAP Kinase Kinase Gene Family AT1G51660 66.8 1.3e-121 433.7
Cone2ag0738 . 49 312 MAP Kinase Kinase Gene Family AT1G51660 53.4 2.0e-77 287.0
Cone20ag1378 . 28 372 MAP Kinase Kinase Gene Family AT3G21220 71.3 1.9e-138 489.6
Cone17ag0025 . 76 364 MAP Kinase Kinase Gene Family AT3G21220 79.2 3.4e-135 478.8
Cone7ag0824 . 1 329 MAP Kinase Kinase Gene Family AT3G21220 69.0 2.4e-125 446.0
Cone4ag0888 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.6 6.0e-124 441.4
Cone2ag0738 . 43 314 MAP Kinase Kinase Gene Family AT3G21220 53.7 1.2e-79 294.3
Cone7ag1164 . 1 358 MAP Kinase Kinase Gene Family AT5G56580 83.6 4.3e-170 594.7
Cone4ag0048 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 4.7e-116 415.2
Cone7ag0046 . 10 342 MAP Kinase Kinase Gene Family AT5G56580 61.1 2.3e-115 412.9
Cone7ag0750 . 11 340 MAP Kinase Kinase Gene Family AT5G56580 58.4 2.3e-110 396.4
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G18350 62.5 1.0e-106 384.0
Cone17ag0025 . 65 335 MAP Kinase Kinase Gene Family AT1G18350 50.5 1.7e-77 287.0
Cone4ag0888 . 62 330 MAP Kinase Kinase Gene Family AT1G18350 50.7 3.2e-73 272.7
Cone2ag0738 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.4 1.4e-111 400.2
Cone17ag0025 . 79 335 MAP Kinase Kinase Gene Family AT1G73500 51.7 4.4e-78 288.9
Cone4ag0888 . 74 330 MAP Kinase Kinase Gene Family AT1G73500 51.7 1.3e-74 277.3
Cone12ag0478 . 59 335 MAP Kinase Kinase Gene Family AT1G73500 50.9 1.3e-74 277.3
Cone12ag0478 . 1 333 MAP Kinase Kinase Gene Family AT1G32320 53.3 4.8e-85 312.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82581 PF00271 Helicase_C 3.60E-10 CL0023 Cone PK