Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1384 ATGGCTTCGGTGAAGGCTCGGTCGAGAGGGACGCATGTGAAGGAAGACGGTGCGAAGCTCGAAGACGGACTCAATACTTTCAAGTCCAATGAATTTGACGCCCAGGCCTACGTGCAGTCCAGATGTGCTCTCAACGAGAAGGAAATCAAACAGTTATGTTCATATCTATTGGATTTGAAGAAAGCTTCTGCAGAGGAGTTGCGAAGAAGTGTATATGCTAATTATGCCTCCTTTATTCGAACATCAAAAGAGATCTCTGATCTTGAGGGAGAGCTATCGTCCATTAGAAACGTGCTGTCTACTCAGGTTGCTTTAATTCATGGTTTGGCTGAAGGAGTTCCCATTGATACGTCCTCTGCTTCTGAACGTTCTGATTTAAATAGTTTATCTGAGGATGAAGAGCCTTCTGAACTAGAGAAGTCGTTAACTGAGTTTCCTGATCTCCTGGATGTATTGTTAGCTGAGAGGAGAGTAGACGAAGCTTTTACTGCTCTAGATGAAGGTGAACAAGTGTTGTCTGAAGCAAAAGAAAATAAATCCTTGAAACCGGCTGCATTCAATACTCTGCAGACATCAATTATAGTTCACAGACAGAGGTTAGCTGATCAGCTTGCTGAAGCTGCTTGCCAGCCTTCTACCCATGGTGCTGAACTGCGTGCGGCTATATCTGCCCTCAAAAAGCTTGGGGATGGGCCTCGTGCTCATACTTTGCTACTTAATGCACATTTTCAGAGGTATCAATACAATATGCAAAGCCTTAGGCCGTCAAGCACCTCATATGGAGGGGCTTATACAGCTGCCCTCTCGCAGCTAGTGTTCTCTGCCATCGCTCAAGCTGCTAGTAATTCACTGGATATTTTTGGCACAGAACCTGCTTATACGTCTGAGCTTGTGGTGTGGGCTACAAAACAAACAGAAGCTTTTGCACTCCTTGTTAAAAGGCATGCATTGGCATCATCAGCAGCTGCTGGCGGATTAAGAGCTGCTGTGGAGTGCGTGCAAATAGCCTTAGGTCATTGTTCATTGTTGGAATCTCGTGGCCTGGCACTTTGTCCGGTGCTCTTTAAACACTTCAGACCTAGTGTTGAGCAAGCACTAGATGCCAATTTAAGACGAATTGAAGAGAGTTCTGCTGCTTTGGCTGCTGCTGATGATTGGGTTCTCACATACCACTCAACAGCTACACGTGAATCTAGCAGGCCTAGCATGTCCCTTCCTAGTTCAGCACTTTTTCAACATAAACTGACAAGTAGTGCACATCGCTTCAATTTGATGGTCCAGGATTTCCTCGAGGATGTAGGGCCTCTGCTGAGTATGCAGTTGGGAGGTCGAACACTGGAAGGTTTGTTCCAAGTATTTGACTCTTATGTGAATATGTTAGTCAAAGCATTACCAGGGTCATTAGAAGAGGAGGCAAACTTTGAAGGTTCTGGAAATAAGATAGTTCGGATGGCTGAGACTGAAGAGCAGCAGATAGCTCTGTTGGCTAATGCATCGTTATTAGCAGATGATCTTCTGCCACGTGGAGCCATGAAACTGTGTCCGCCTAATCAGCCTACTTATAAGGACGATGCACATCAAAAAAATAAGGATAGGCCAAACCGTCATTCTGAGCAAAGAGAGTGGAAAAGGCGGCTTGTGAGCTCGGTGGATAGATTGAAAGATACTTTTTGTCGTCAGCATGCTCTAGATCTTATTTTCACAGAAGATGGTGATAGCCATATTAATGCTGAGATGTACATAAACATGGATGGGAAGAATGAGGTGGAATGGTTTCCATCTCTGATATTCCAGGAACTTTATGTAAAACTGAACCGAATAGCTAGTATTGCGGTAGAGATGTTTGTGGGCAGGGAAAGATTTGCAACATTGCTATTGATGAGACTTACAGAAACTGTCATCTTGTGGCTTTCGGGTGACCAAAGTTTTTGGGATGATATAGAGGAAGGACCAAGGCCTTTAGGTCCTGTTGGTCTGCAACAGTTGTATTTGGATATGAAGTTCGTGATATCCTTTGCTTCCCAAGGTCGATATTTGTCTCGGAATTTGCAGCGAGTTGTCAATGAGATCATATCAAAAGCCATGACAGCTTTTGCTGCAACAGGGATGGATCCAGACAGTGTACTGCCAGACGATGACTGGTTCAACGACATTTGTCAAGATGCAATTGAAAGATTGAGTGGAAAGCCAAGAGCAATCAACGGGGATCGAGATCTTAACAGCCCAACTGCCTCCGTCTCAGCGCAATCAATTTCTTCTGTAAGATCTCATGGCAGCTCCTAA 2283 44.59 MASVKARSRGTHVKEDGAKLEDGLNTFKSNEFDAQAYVQSRCALNEKEIKQLCSYLLDLKKASAEELRRSVYANYASFIRTSKEISDLEGELSSIRNVLSTQVALIHGLAEGVPIDTSSASERSDLNSLSEDEEPSELEKSLTEFPDLLDVLLAERRVDEAFTALDEGEQVLSEAKENKSLKPAAFNTLQTSIIVHRQRLADQLAEAACQPSTHGAELRAAISALKKLGDGPRAHTLLLNAHFQRYQYNMQSLRPSSTSYGGAYTAALSQLVFSAIAQAASNSLDIFGTEPAYTSELVVWATKQTEAFALLVKRHALASSAAAGGLRAAVECVQIALGHCSLLESRGLALCPVLFKHFRPSVEQALDANLRRIEESSAALAAADDWVLTYHSTATRESSRPSMSLPSSALFQHKLTSSAHRFNLMVQDFLEDVGPLLSMQLGGRTLEGLFQVFDSYVNMLVKALPGSLEEEANFEGSGNKIVRMAETEEQQIALLANASLLADDLLPRGAMKLCPPNQPTYKDDAHQKNKDRPNRHSEQREWKRRLVSSVDRLKDTFCRQHALDLIFTEDGDSHINAEMYINMDGKNEVEWFPSLIFQELYVKLNRIASIAVEMFVGRERFATLLLMRLTETVILWLSGDQSFWDDIEEGPRPLGPVGLQQLYLDMKFVISFASQGRYLSRNLQRVVNEIISKAMTAFAATGMDPDSVLPDDDWFNDICQDAIERLSGKPRAINGDRDLNSPTASVSAQSISSVRSHGSS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8826703 8831209 - Conep20aG0143100.1 Cone20ag1384 461288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1384 760 FunFam Exocyst complex component EXO84B 129 252 - -
Cone20ag1384 760 FunFam Exocyst complex component EXO84B 261 365 - -
Cone20ag1384 760 Gene3D - 261 365 IPR042560 -
Cone20ag1384 760 MobiDBLite consensus disorder prediction 512 541 - -
Cone20ag1384 760 MobiDBLite consensus disorder prediction 126 140 - -
Cone20ag1384 760 PANTHER EXOCYST COMPLEX COMPONENT 8 19 753 IPR033961 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006893(PANTHER)|GO:0008104(PANTHER)
Cone20ag1384 760 MobiDBLite consensus disorder prediction 738 760 - -
Cone20ag1384 760 Pfam Exocyst component 84 C-terminal 141 349 IPR032403 -
Cone20ag1384 760 MobiDBLite consensus disorder prediction 523 541 - -
Cone20ag1384 760 Pfam Vps51/EXO84/COG1 N-terminal 27 102 - -
Cone20ag1384 760 MobiDBLite consensus disorder prediction 730 760 - -
Cone20ag1384 760 SUPERFAMILY Cullin repeat-like 132 366 IPR016159 -
Cone20ag1384 760 MobiDBLite consensus disorder prediction 116 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1384 K19986 - - rcu:8264741 1168.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0993 Cone-Chr13:8376390 Cone20ag1384 Cone-Chr20:8826703 2.58E-273 dispersed
Cone20ag1384 Cone-Chr20:8826703 Cone5ag1496 Cone-Chr5:10107847 9.88E-111 dispersed
Cone20ag1384 Cone-Chr20:8826703 Cone7ag0819 Cone-Chr7:6106880 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g821 Blo01g00413 . . . Bpe13g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .