Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1403 ATGTGGCAGCCTTCAGGAAATGGAAATGGAAATGGAATTGGTGGAAGAAAGGGAGGAGGTAATGGGTTGGTGGCAGTAGCTATAGACAGGGAAAAAGGTAGTCAGAATGCCCTCCGATGGGCCGCCGACAACATCCTCAGCAGGGGCCAAACTGTTGTTCTGATTCACGTCGTGCAGCGGCCATCCTCTTCTGCTTCCTTCATGGGAGCCGTTGTATGTGATGCCAGCGATTCAAGATCTAAATCGCCACATAAACAGCATCTCGAGAGGACGACCAAGGATCTTTTCCTTACCTTCCACTGCTACTGTACTCGTAAGGATATACAATGCCTAGATGTGATACTGGAAGACACGGACATTGCCAAAGCTATTATAGAATACGCTTCGTATGCGGCGATCGAGAATCTGGTGCTCGGCGCTCCAGCAAAACATGGATTTATCAGATTCAAAGCATCCAGTGTTTCAAGTAGTGTATCAAAGGCAGCGCCCGATTTCTGCACCGTCTATGTAATTGCGAAAGGGAAGCCATCTTCAGTGAGAAAAGCTACTCGTCCCACTCCGTTTACTTCCCCACTTCTAGACCACATACGTTCCTGTGACGTTATCTCTGTTAAATCTTCCGACACTCCCAGACATAGTGACAGAGATAATTTGCACAGTTCATCCTTCAAGCCTCGAAGCTTCCAGGAGGAACCTGCATTTAGGTCGCCGTTAACCGGAGGATCAGGTTGGAACACAAAGATTGGTGGGGGGTTCTCTGAATCAGATACTGATATATCTTTTGTAAGCTCAGGCAGGCCAAGTTCAGACCGTCCTTCTTCCTCCATGTTGTATGACTATAACTCTGATTCAGGCCCACGCCTTTCAACCAGCTCCGATCAAAGCTTTAGTTCCATCCGTTTGGGATCCAAATGGAATGACGCCGCTTTTCTCCATGAATTCTCTTCCATTTCACAGGAAAGTAATAGGACTTCATGCTCCGCCTCTTCACAGAACATGGAGGATGTGGAAGCTGAAATGAGGAGGTTGAAGCTAGAGCTAAAGCAAACAATGGAGATGTACAGTACAGCATGCAGAGAAGCACTTACGGCAAAGCACAAGGCCATGGAGCTGCATAACTGGAGAGTGGAAGAAGAAAAAAGATTAGAAGAGGCAAGGCTCGCCCAGGAAGCCGCAATGGCAGTTGCGAACCAAGAGAAATTCAGGTGCAAGGCAGCCATTGAGGCAGCCGATGCAGCCAAGCGGATTGCAGAGTGGGAATCAAAAAGAAGAGCCAACGTGGAACTGAGAGCACTCAAAGAAGCAGAGGAAATGCGCAGGGCGTTGGATAATCTAGCACATACTGATGTCAAATACAGGAGATATAACATTGAGGAGATTGAAGCTGCAACTAATCAATTTGATCCATCTCGTAAGATTGGGGAAGGTGGTTATGGACCTGTATACAAGTGTTATCTGGATCACACACCTGTCGCGGTGAAGGTATTGCGTCCGGAGGCATCTCAAGGGAGGTCACAATTCCAGCAAGAGGTTGACATCCTTAGCTGCATAAGGCATCCCAACATGGTACTTCTTTTAGGCGCATGCCCTGAATATGGCATACTCGTTTACGAGTACATGGCCAATGGAAGCTTGGACGATTGTATCTTTAGGAAAGGGAATACCCCAGTTCTGTCCTGGCAGATCAGGTTCCGGATCGCTGCGGAGATTGGCACTGGATTGTTGTTCCTCCACCAAACCAAGCCAGAGCCATTAGTCCATCGTGACCTTAAGCCAGGGAACATATTACTAGACCACAACTATGTGAGTAAGGTTAGTGATGTTGGATTGGCAAGGCTTGTCCCTCTAATTGCAGAAAATGTAACACAGTGCTGCATGACATCAGCAGCCGGAACTTTCTGCTACATTGATCCCGAATATCAGCAGACTGGAATGCTTGGTGTAAAATCGGATGTGTATTCTCTAGGGATCATGCTTCTACAAATGCTAACGGCAAAGCCCCCTATGGGACTGGCTCACCATGTAGAAAGGGCAATTGAGAAGGGGAGATTTTTTGAGATGCTGGATCCTGCAGTGAAGGACTGGCCAAAAGAGGAGGCCCTGCATTTTGCCAAGCTTGCACTCAGTTGTGCCGAACTCAGAAGGAAAGACAGGCCGAATCTTGGGGGTGTAGTGTTGCCGGAGCTCAATAAGCTGAGAGAATTTGCTGATAAAAGCATTAACTGTATGATGGGAGGCACATTAGTGGTTCAAAGCCACCTTCCCATTCGACAGCAACATGAGGTGATCATGAGTTCAAATTAA 2304 47.48 MWQPSGNGNGNGIGGRKGGGNGLVAVAIDREKGSQNALRWAADNILSRGQTVVLIHVVQRPSSSASFMGAVVCDASDSRSKSPHKQHLERTTKDLFLTFHCYCTRKDIQCLDVILEDTDIAKAIIEYASYAAIENLVLGAPAKHGFIRFKASSVSSSVSKAAPDFCTVYVIAKGKPSSVRKATRPTPFTSPLLDHIRSCDVISVKSSDTPRHSDRDNLHSSSFKPRSFQEEPAFRSPLTGGSGWNTKIGGGFSESDTDISFVSSGRPSSDRPSSSMLYDYNSDSGPRLSTSSDQSFSSIRLGSKWNDAAFLHEFSSISQESNRTSCSASSQNMEDVEAEMRRLKLELKQTMEMYSTACREALTAKHKAMELHNWRVEEEKRLEEARLAQEAAMAVANQEKFRCKAAIEAADAAKRIAEWESKRRANVELRALKEAEEMRRALDNLAHTDVKYRRYNIEEIEAATNQFDPSRKIGEGGYGPVYKCYLDHTPVAVKVLRPEASQGRSQFQQEVDILSCIRHPNMVLLLGACPEYGILVYEYMANGSLDDCIFRKGNTPVLSWQIRFRIAAEIGTGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKVSDVGLARLVPLIAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQMLTAKPPMGLAHHVERAIEKGRFFEMLDPAVKDWPKEEALHFAKLALSCAELRRKDRPNLGGVVLPELNKLREFADKSINCMMGGTLVVQSHLPIRQQHEVIMSSN 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 8955612 8958699 - Conep20aG0145000.1 Cone20ag1403 461307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1403 767 Pfam Universal stress protein family 24 163 IPR006016 -
Cone20ag1403 767 SMART serkin_6 467 736 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1403 767 CDD STK_N 23 174 - -
Cone20ag1403 767 Coils Coil 326 353 - -
Cone20ag1403 767 Gene3D HUPs 24 173 IPR014729 -
Cone20ag1403 767 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 171 - -
Cone20ag1403 767 ProSiteProfiles Protein kinase domain profile. 467 736 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1403 767 MobiDBLite consensus disorder prediction 205 293 - -
Cone20ag1403 767 SUPERFAMILY Protein kinase-like (PK-like) 450 725 IPR011009 -
Cone20ag1403 767 Gene3D Transferase(Phosphotransferase) domain 1 540 744 - -
Cone20ag1403 767 MobiDBLite consensus disorder prediction 239 293 - -
Cone20ag1403 767 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 539 - -
Cone20ag1403 767 Pfam Protein kinase domain 470 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag1403 767 MobiDBLite consensus disorder prediction 207 221 - -
Cone20ag1403 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag1403 767 PANTHER OS02G0152300 PROTEIN 24 738 IPR051348 -
Cone20ag1403 767 Gene3D Phosphorylase Kinase; domain 1 445 539 - -
Cone20ag1403 767 FunFam U-box domain-containing protein 51 540 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0935 Cone-Chr17:7322544 Cone20ag1403 Cone-Chr20:8955612 5.81E-211 dispersed
Cone20ag0278 Cone-Chr20:1246104 Cone20ag1403 Cone-Chr20:8955612 3.55E-220 dispersed
Cone20ag0626 Cone-Chr20:3739895 Cone20ag1403 Cone-Chr20:8955612 1.90E-241 dispersed
Cone20ag1321 Cone-Chr20:8556448 Cone20ag1403 Cone-Chr20:8955612 9.97E-168 dispersed
Cone20ag1403 Cone-Chr20:8955612 Cone4ag1867 Cone-Chr4:13376518 1.64E-219 dispersed
Cone16ag0333 Cone-Chr16:4250297 Cone20ag1403 Cone-Chr20:8955612 1.34E-264 transposed
Cone17ag0007 Cone-Chr17:59149 Cone20ag1403 Cone-Chr20:8955612 5.38E-283 transposed
Cone17ag0006 Cone-Chr17:58363 Cone20ag1403 Cone-Chr20:8955612 7.78E-164 wgd
Cone17ag0006 Cone-Chr17:58363 Cone20ag1403 Cone-Chr20:8955612 7.78E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82585 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1403 - - - 0.0