Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0010 ATGTATAGAGTATCATTTTATCAAATTATCTCTCTGGCTAATCCTCTCCATATAAGGGAATGTGTCGTGTTCTATGTATGTGCTGTAGCCGTGGCTGAACGCGACCAGGAAAGTTCCCCAGTCCTTTCGAAGATTTTCATGTCCATCTTGCCTTCTCACACCCAAGGTCCCTCATCGTCGTCTTCTTCTTCCTCAATTCCCTCTTTGAACCTTGATTCTCAACATGGGGAGATCAGCTTTCTCTCACCACAACACCAATTCCTCCGATCCCTTCGAATCGAGGATTCCCAACCTACCGTCCCTGATTCCCCTCATAATTCAGGCGCATCGGCTCAAGCTGCACAAGATTCTGGTGGATCTTCCAAAAAGGTAAATGAAGCGGAGACACAAAATGGTGTGAAGACTTCATTTCATGAAAACACAAGCAGTCGTTCATGGCATCATTCGGGTGGGCCAGGAGTTAGATCAGTCCATTTCAGAGGAAAAACGGTAGACATGTCTTCTCAAGGTGAGCGAAGTGCTGGGACAGTTAGCTCTCCTGTTAGTACTCCATCTTCAACTGGAAGAAGAGCCCAAATGATGAATGCCAACCACTTGCTGAATTTTCATTATGATCCCATTCCTCGGCCTCAACCCAGAGCTCCTCCTCCACGAAGGCAACAGAAGATAAAGCCATACAAAAAAGATCTATTTCTTCAGGCTAATTACAAATTCGTAGTACTAGATTCAGGGAATTATTCTCCAGAGTCTATGGATCCCGATAAGATGCTGCGGTGGGAGGATATTATATGTGTCAGATACTCAACACCATCTTTGGTTCAGTGCCCTATCTGTTTGGAATATCCTCTATGTCCACAAATGTCCTCATGCGGACATATTTTTTGTTTCCCCTGTATTTTGCGTTACTTATTAATGGGTGAGGAGGATCACAAAGGTGAATGCTGGAAAAGATGCCCTTTATGTTTTGTGATGATATCTCCAAAGGATTTGTACACTGTGTACATTGAGAATGTGAAGCAGTATTCAATTGGTGATACCATAGTTTTCATGCTTTTAACCCGTCAAAAAGAGTCATTCAGTATATCATATAAAAATCGCCAAGAGAGTGATGGCATGTCGGTTGGCCACAATGATATCTATGATCCTATCTCAAAGTTTACATTTACCTCAGATGTGGACCTCTCTGTTAGAGAAGCGATATCAGATCTAGATGAATGGTTGGTTAAAGCACATTTAGGGCTTGTTGATGACCTCGAGAGGCTTCCATATGTTTCAGCTGCAATGGAGCAATTAGAACAGAGGAAAAAGTATTGGAATGAACACAAGACAAACGGGAGCTCTAAATGTTCTAGTTATACCGATTCTCAAACAGAATCTCTTTTACTTCGTTCAGCTCCCAATGCGAATGCCATCACCTTTAAGCCAGATGGTAGTTGTTTTGATGAGACTTCTTATGTGGTTGAATCGTTGGATAGCCAAGAAAATGTTTCTTCTTCCTATGATGAAAGGAAGAGTGCTCAAAGACATCTAAATGGATATAGAGATGTAATGGACAAGGACTCCTACAATTTCTACCAGGCTGCAGATGGTCAGCTCCTCATTCTTCATCCATTATGCATGAAGTGTCTTCTACACCATTATGGGGGTTATGACATGCTTCCACACAGAATAAGTGGAAAGATCCTGCAGTTGGAGACAATAACCCAGACTGAGGCAATGAGGAAGCGCTATCGATATTTAAGTCATTTCTCTTTGACAACAACATTTCAGCTTTGCGAAATTGATCTCGGTGAACTATTGCCTTCTGCTGCCCTGCTTCCATTTATTGATGAAATAAAGAAACGCGAAAAGCAAAGGAAGCAACTTGCTAAAAAGGAGCTGAAGGAGAAAATCAAGGCAGAAGCTATCACAGAATATCCTATCCCCATATTACCCAATTTTGGACAGTATAGTCACAACGACTCCCCAATGTTCTCAATGGATGATTTTGAAGCCTTGGGAAGTAGCACAACAACATCAAGCCCCCCAGCTGGTGGAGAAAGGAAGCTACTCTTTTCTAGTGTTACGAGGCTTGGTTTTGCAGCTTCCCATGATTCTCCCGCCTTGAAAATTGAGGAAACCAATTTTTCCCATAACAATCAAGTGTCAAGTGACCCATCATCTAGTTGGAGAGGGTCGGGCGGTAGCCCCTCATCATTTGCTAATGTAATATCAAGAGCCAAGTCAGTTGAAAATATGGATGTAGCTGCAGCTGCAGCAGCACCAGAAGCCAAAACAAATGAAGTGGGTAGGAAGGGAAAGAAACCAAGTCGTGTCCTTCTGTCTACGGCTGGTGGGCGCCGCTACTGA 2349 42.91 MYRVSFYQIISLANPLHIRECVVFYVCAVAVAERDQESSPVLSKIFMSILPSHTQGPSSSSSSSSIPSLNLDSQHGEISFLSPQHQFLRSLRIEDSQPTVPDSPHNSGASAQAAQDSGGSSKKVNEAETQNGVKTSFHENTSSRSWHHSGGPGVRSVHFRGKTVDMSSQGERSAGTVSSPVSTPSSTGRRAQMMNANHLLNFHYDPIPRPQPRAPPPRRQQKIKPYKKDLFLQANYKFVVLDSGNYSPESMDPDKMLRWEDIICVRYSTPSLVQCPICLEYPLCPQMSSCGHIFCFPCILRYLLMGEEDHKGECWKRCPLCFVMISPKDLYTVYIENVKQYSIGDTIVFMLLTRQKESFSISYKNRQESDGMSVGHNDIYDPISKFTFTSDVDLSVREAISDLDEWLVKAHLGLVDDLERLPYVSAAMEQLEQRKKYWNEHKTNGSSKCSSYTDSQTESLLLRSAPNANAITFKPDGSCFDETSYVVESLDSQENVSSSYDERKSAQRHLNGYRDVMDKDSYNFYQAADGQLLILHPLCMKCLLHHYGGYDMLPHRISGKILQLETITQTEAMRKRYRYLSHFSLTTTFQLCEIDLGELLPSAALLPFIDEIKKREKQRKQLAKKELKEKIKAEAITEYPIPILPNFGQYSHNDSPMFSMDDFEALGSSTTTSSPPAGGERKLLFSSVTRLGFAASHDSPALKIEETNFSHNNQVSSDPSSSWRGSGGSPSSFANVISRAKSVENMDVAAAAAAPEAKTNEVGRKGKKPSRVLLSTAGGRRY 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 86071 90308 + Conep02aG0001000.1 Cone2ag0010 432477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0010 782 MobiDBLite consensus disorder prediction 96 189 - -
Cone2ag0010 782 Coils Coil 613 633 - -
Cone2ag0010 782 Pfam Zinc finger, C3HC4 type (RING finger) 275 321 IPR018957 GO:0046872(InterPro)
Cone2ag0010 782 MobiDBLite consensus disorder prediction 162 189 - -
Cone2ag0010 782 MobiDBLite consensus disorder prediction 752 782 - -
Cone2ag0010 782 MobiDBLite consensus disorder prediction 707 731 - -
Cone2ag0010 782 SMART ring_2 275 321 IPR001841 -
Cone2ag0010 782 ProSitePatterns Zinc finger RING-type signature. 290 299 IPR017907 -
Cone2ag0010 782 ProSiteProfiles Zinc finger RING-type profile. 275 321 IPR001841 -
Cone2ag0010 782 CDD RING-HC_RNF10 273 330 - -
Cone2ag0010 782 MobiDBLite consensus disorder prediction 96 149 - -
Cone2ag0010 782 PANTHER RING FINGER 10 FAMILY MEMBER 101 782 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Cone2ag0010 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 336 IPR013083 -
Cone2ag0010 782 SUPERFAMILY RING/U-box 274 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0010 Cone-Chr2:86071 Cone3ag1414 Cone-Chr3:32967377 2.85E-08 dispersed
Cone16ag1030 Cone-Chr16:9925862 Cone2ag0010 Cone-Chr2:86071 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0010 K26979 - mdm:103411107 797.349