Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0011 ATGTTACCGAGGGCTAACGGTGCTATTTGGACGGAGGGTGACGAAGAAGACGTTGCTGCGTCTTGGACCAGAAACAGCAGTGAGGCAGAGGTTGAGCTTAATAACAAAGACGTCAACTTTGGTATGGATCCCTCTTCTCTTACTTCGTTCAAATCCATGCTGGAAGCTGACTGGTACATGAATTCTGATATAAACTCATCTAACCAAGATCTTCACACCCTCTCAAACCACCAAGAAATCAGCTTTGTTTCAAATCCAGCCGACAATCTGCTCTTACACCCCCAAATCGATTCTTCATCTTCCTGCTCTCCCTCACAGGCGTTCACTCTCGATTCATCACAGTTACAGTCCTTTTTCCCTCCACACGCCTGCTTCTCTTCGCACCTTAATGTTCTCAATACTCTTGACAATGGTTTCGATATGGGCTCTGAAACTGCTTTCCTCAGCTCCTTTTCGGCGAATCATTCCCCTGTCTTTATGGCTGCCATGAATTCTCAATCTCAAATCGCTACTCCGGAGCTGGGTCCAAGCTCTGAATTTCCACTGATTCGGTCTAATGACCCGGTCTCTCTCAGGTCAGGGTTTAGTCTTGAAGGCTTGGAAGGTAAGGACGAATTTGGTAATGCTCTGTTTCCGAATACGTCAAAAGTTTTGAGACCTCGTCAAGCTCTCTCTCCCGTGAATGCCCAGCCCACACTATTTCAGAAGCGAGCTGCGCATCGACAGAGCTCATTCGGAGCTGATAAGTTGGGGAATTTGGATGTTTCAGGATTTAGATTCGGCAGAGGAGCATTGGCAATAGAGACCATGGAGAAGAAGAAGAGGAAGAGGAATGAGGAGGGTGACATTGAAGATGCAAGCTTTGTTATCTCTAGCTTGAATTATGACTCTGATGAGCTCAATGAGTATTATAATGTGGAGGAAAATACCCAAAATGGTGCAAGTCATTGTAATGCAAATAGTAGTGCAAGTGGCAGTGATAGTAAGGGCAAGAAGAAGGGGCTGCCAGCCAAGAATCTGATGGCTGAAAGGCGGAGGAGGAAGAAACTCAATGATCGGCTCTATGTGCTTAGGTCGGTCGTGCCTAGGATTAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATCGAGTACTTGAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAATGAACTTGAGTCTACCCCACAAGGCTCTCTGTTACCGCCTTCTAGAAGTTTTCATCCTTTAACGCCTACTCCTCATACCCTTGCCTGCCCCCCAGTCAAGGAAGAGCTATGCCTAAGCTCATTACTTAGCCCTAAAAACCATCCTGCAAGGGTGGAGGTGAGGGTAAGTGAAGGGAGAGGAGTGAGTATCCACATGTTCTGCCCTCCAAGAGCCGGCCTCCTACTGTCGAGTATGAGGGCTCTTGACAGCCTTGGATTGGACATACAGCAAGCAGTTATCAGCTGTTTCAATGGCTTCGCTTTGGATGTATTCCTAGCTGAGCAATGCAGGGATGCCCAACATGTCTCCACTGACCAAATTAAAGCTCTACTTTTGGTTTCCGCTGGCTTCGATACCATGTAA 1578 46.83 MLPRANGAIWTEGDEEDVAASWTRNSSEAEVELNNKDVNFGMDPSSLTSFKSMLEADWYMNSDINSSNQDLHTLSNHQEISFVSNPADNLLLHPQIDSSSSCSPSQAFTLDSSQLQSFFPPHACFSSHLNVLNTLDNGFDMGSETAFLSSFSANHSPVFMAAMNSQSQIATPELGPSSEFPLIRSNDPVSLRSGFSLEGLEGKDEFGNALFPNTSKVLRPRQALSPVNAQPTLFQKRAAHRQSSFGADKLGNLDVSGFRFGRGALAIETMEKKKRKRNEEGDIEDASFVISSLNYDSDELNEYYNVEENTQNGASHCNANSSASGSDSKGKKKGLPAKNLMAERRRRKKLNDRLYVLRSVVPRISKMDRASILGDAIEYLKELLQRINDLHNELESTPQGSLLPPSRSFHPLTPTPHTLACPPVKEELCLSSLLSPKNHPARVEVRVSEGRGVSIHMFCPPRAGLLLSSMRALDSLGLDIQQAVISCFNGFALDVFLAEQCRDAQHVSTDQIKALLLVSAGFDTM 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91010 93094 - Conep02aG0001100.1 Cone2ag0011 432478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0011 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 406 IPR036638 GO:0046983(InterPro)
Cone2ag0011 525 Pfam Plant bHLH transcription factor, ACT-like domain 443 515 IPR054502 -
Cone2ag0011 525 MobiDBLite consensus disorder prediction 311 343 - -
Cone2ag0011 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983(InterPro)
Cone2ag0011 525 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 295 521 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone2ag0011 525 Pfam Helix-loop-helix DNA-binding domain 341 383 IPR011598 GO:0046983(InterPro)
Cone2ag0011 525 Gene3D - 327 399 IPR036638 GO:0046983(InterPro)
Cone2ag0011 525 FunFam BHLH transcription factor 330 398 - -
Cone2ag0011 525 Coils Coil 373 397 - -
Cone2ag0011 525 CDD ACT_UUR-ACR-like 455 497 - -
Cone2ag0011 525 MobiDBLite consensus disorder prediction 311 328 - -
Cone2ag0011 525 SMART finulus 340 389 IPR011598 GO:0046983(InterPro)
Cone2ag0011 525 CDD bHLH_AtAMS_like 337 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0258 Cone-Chr14:1190746 Cone2ag0011 Cone-Chr2:91010 1.13E-08 dispersed
Cone15ag0276 Cone-Chr15:1286936 Cone2ag0011 Cone-Chr2:91010 3.34E-07 dispersed
Cone20ag0570 Cone-Chr20:3250453 Cone2ag0011 Cone-Chr2:91010 5.76E-28 dispersed
Cone2ag0011 Cone-Chr2:91010 Cone4ag1276 Cone-Chr4:10485093 1.93E-34 dispersed
Cone11ag0017 Cone-Chr11:112158 Cone2ag0011 Cone-Chr2:91010 6.39E-175 wgd
Cone16ag1029 Cone-Chr16:9923448 Cone2ag0011 Cone-Chr2:91010 8.02e-311 wgd
Cone18ag1463 Cone-Chr18:9795181 Cone2ag0011 Cone-Chr2:91010 1.69E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45671 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0011 - - - 0.0