Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0012 ATGGTGATGATGATGGAGCAAGAAGAGCTACTTCACGAGAAAACCGAGGTGCAGGAATCTTTCCGGGTCGGATCGACCCGTGACCTTGGCTCTGCGGTGACAGGCTTCAGAGTGGAGAGGAAGAAAAGGATGGCCAGACAGAGGCGATCATCCCCTCCTACTCTCCTCTCTTTTCCTCCTCCACCTCCCTCCTCCTCCGCCTCGCACGTGCCCAGTATCTCTCCTCCTCCTACACTTACTACTACTACTACTACTAATTCTACACTTGATGATCCCCCACGTACAATTGATCCAACAAGGTTCAAGTTCCTGTTTCAAAAGGAGCTCAAGAACAGTGATGTCAGCTCCCTCAGGAGGATGATACTCCCCAAGAAAGCCGCAGAGGCCCACCTTCCAACTCTGGAGTCCAAAGGAGGGATCCATATCAGAATGCAGGACTTGGATGGTCTGCATATCTGGACCTTCAAGTACAGGTTTTGGCCCAATAACAACAGCCGGATGTACGTACTTGAGAACACCGGGGACTTTGTTAGTGCTCACGGATTACAACTAGGAGACTTCATCATGGTTTACCAAGATATTCTAAATCACAACTATGTGATTCAAGCCAGAAAGGCATCCGACCGGGATATATATACAGATATAACCAACAATGTTATTGTGAGCGACCAACTTATTAATCTTTATGATTACGATATGGTTCACAAAACTTACTTGAACCTAATGATGGAAGATGATCCAACCGACTCTGCCGGCTTGTATATCTACGACACAACCACTACGGCGGCCACCTTCTCAGATGAGTCTCCCCTCAATTATCTGTGCGGACCTTCATTGACAAATTATAATAGTTATAACTACATCACCACAAATCTCTATTCCAGTATGGGATCAGTGCAAGGAGCTGCTCATAATTTTGATGCCTTGGGATGTGCTGACAGCTTGTCCCTTGATGACTTTTCACTATCTTAA 972 46.3 MVMMMEQEELLHEKTEVQESFRVGSTRDLGSAVTGFRVERKKRMARQRRSSPPTLLSFPPPPPSSSASHVPSISPPPTLTTTTTTNSTLDDPPRTIDPTRFKFLFQKELKNSDVSSLRRMILPKKAAEAHLPTLESKGGIHIRMQDLDGLHIWTFKYRFWPNNNSRMYVLENTGDFVSAHGLQLGDFIMVYQDILNHNYVIQARKASDRDIYTDITNNVIVSDQLINLYDYDMVHKTYLNLMMEDDPTDSAGLYIYDTTTTAATFSDESPLNYLCGPSLTNYNSYNYITTNLYSSMGSVQGAAHNFDALGCADSLSLDDFSLS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 100848 102901 - Conep02aG0001200.1 Cone2ag0012 432479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0012 323 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677(InterPro)
Cone2ag0012 323 MobiDBLite consensus disorder prediction 20 95 - -
Cone2ag0012 323 Gene3D - 101 218 IPR015300 -
Cone2ag0012 323 SMART B3_2 105 207 IPR003340 GO:0003677(InterPro)
Cone2ag0012 323 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 42 206 IPR044800 GO:0003700(InterPro)
Cone2ag0012 323 MobiDBLite consensus disorder prediction 54 70 - -
Cone2ag0012 323 CDD B3_DNA 103 205 IPR003340 GO:0003677(InterPro)
Cone2ag0012 323 SUPERFAMILY DNA-binding pseudobarrel domain 103 193 IPR015300 -
Cone2ag0012 323 Pfam B3 DNA binding domain 105 204 IPR003340 GO:0003677(InterPro)
Cone2ag0012 323 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0012 Cone-Chr2:100848 Cone7ag0079 Cone-Chr7:345413 6.61E-19 dispersed
Cone11ag0023 Cone-Chr11:135379 Cone2ag0012 Cone-Chr2:100848 7.32E-69 wgd
Cone16ag1028 Cone-Chr16:9914226 Cone2ag0012 Cone-Chr2:100848 5.86E-162 wgd
Cone18ag1457 Cone-Chr18:9767436 Cone2ag0012 Cone-Chr2:100848 6.75E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45672 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0012 K09287 - cit:102617915 266.929