Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0034 ATGAAAGTTTCAGACTTTTCAGGTCACCTTCTTCAATCAAAGGTTGCCCCTTTTCTTCCTAATTCTTCTCAATTTTTCTTTTCTATTTTCCCCCTACTTTTGTTATTTGCCTCTCTGTCCATGGATCCCAAGGGCTCAACGACATCAAATTTCTTGACATCAAACATGGGTGAAAACAACAACAGCAACAGCAATACCAACACCAACAGCAACAAACCTGCTGAAATCAAAGACTTCCAGATTGTAATAGCAGAGAAAGAAGAAGGGAAGAAGCAATTAGCTCCCAAAAGAAGCTCAAACAAAGATAGACACACAAAAGTTGAAGGTAGAGGGAGAAGGATAAGGATGCCAGCTCTATGTGCAGCAAGGATATTCCAATTAACCAGAGAATTAGGTCACAAATCAGATGGGGAAACAATCCAATGGCTTCTACAGCAAGCAGAGCCATCAATAATTGCAGCCACAGGGACTGGAACTATTCCAGCCTCTGCTCTAGCCGCATCAGGTGTGTCGATTTCACATCAGACGGCTACTTTATCATCTGGGTTACATTCAAAACTTGATGAAATGGGTGGTGGGTCCGGATTTGGGCCAGGAAGCAGTAGGACCAGCTGGGCTAATTTGGGTCGGACCCATGTGGCGGCGACAGGATTGTGGCCACCTGTCAGTGGATTCTCTTCTTCTGCTACAAATTTGGGGACTGAAAGCTCAAATTATTTGCAGAAAATGGGATTCCCTGGCTTTGATTTTGGTGGGAATAATAACATGAATGCTATGAGTTTTACTTCTATTTTAGGTGGGACCAATAATACCAATCAACACCTGCCTGGGCTAGAGCTTGGCTTGTCTCAAGACGGTCATATTGGAGTTTTAAATCCACAAGCTTTGACTCAGATGTATCAGCAGGTGGGTCATAGGGTTCAGCTTCCGCACCACCACCAGCAACCGCCTCAGCCTCCACCTCAGCACCACCATCAACAGCAGCAGCAGCAGCAAGATGGTACCAAGGATGATTCTGAAGATTCAGGACAGTAG 1035 44.83 MKVSDFSGHLLQSKVAPFLPNSSQFFFSIFPLLLLFASLSMDPKGSTTSNFLTSNMGENNNSNSNTNTNSNKPAEIKDFQIVIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAASGVSISHQTATLSSGLHSKLDEMGGGSGFGPGSSRTSWANLGRTHVAATGLWPPVSGFSSSATNLGTESSNYLQKMGFPGFDFGGNNNMNAMSFTSILGGTNNTNQHLPGLELGLSQDGHIGVLNPQALTQMYQQVGHRVQLPHHHQQPPQPPPQHHHQQQQQQQDGTKDDSEDSGQ 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 186883 188424 - Conep02aG0003400.1 Cone2ag0034 432501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0034 344 MobiDBLite consensus disorder prediction 89 109 - -
Cone2ag0034 344 MobiDBLite consensus disorder prediction 50 72 - -
Cone2ag0034 344 Pfam TCP family transcription factor 99 295 IPR017887 -
Cone2ag0034 344 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 328 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone2ag0034 344 MobiDBLite consensus disorder prediction 307 344 - -
Cone2ag0034 344 MobiDBLite consensus disorder prediction 330 344 - -
Cone2ag0034 344 ProSiteProfiles TCP domain profile. 100 154 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0034 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1521 Cone-Chr1:57261889 Cone2ag0034 Cone-Chr2:186883 1.15E-30 dispersed
Cone2ag0034 Cone-Chr2:186883 Cone3ag0268 Cone-Chr3:1397966 6.96E-31 dispersed
Cone11ag0038 Cone-Chr11:200499 Cone2ag0034 Cone-Chr2:186883 1.92E-84 wgd
Cone16ag1006 Cone-Chr16:9820009 Cone2ag0034 Cone-Chr2:186883 2.99E-165 wgd
Cone18ag1441 Cone-Chr18:9703268 Cone2ag0034 Cone-Chr2:186883 1.22E-84 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1521 . 29 250 TCP Transcription Factor Family AT5G23280 62.7 3.5e-65 245.7
Cone5ag0514 . 31 254 TCP Transcription Factor Family AT5G23280 61.9 5.0e-64 241.9
Cone14ag0318 . 1 348 TCP Transcription Factor Family AT2G45680 50.8 6.6e-70 261.9
Cone15ag0348 . 71 342 TCP Transcription Factor Family AT2G45680 54.6 1.6e-63 240.7
Cone19ag0075 . 78 175 TCP Transcription Factor Family AT3G47620 88.9 6.8e-41 166.0
Cone19ag0952 . 67 154 TCP Transcription Factor Family AT3G47620 92.0 4.9e-39 159.8
Cone19ag0075 . 78 172 TCP Transcription Factor Family AT1G69690 87.4 3.6e-38 156.4
Cone2ag0034 . 75 304 TCP Transcription Factor Family AT3G27010 60.4 5.9e-62 235.3
Cone16ag1006 . 32 266 TCP Transcription Factor Family AT3G27010 60.5 7.7e-62 235.0
Cone18ag1441 . 1 291 TCP Transcription Factor Family AT3G27010 53.2 1.2e-54 211.1
Cone11ag0038 . 5 260 TCP Transcription Factor Family AT3G27010 52.3 1.1e-52 204.5
Cone5ag0514 . 1 252 TCP Transcription Factor Family AT5G08330 55.4 4.8e-64 241.9
Cone1ag1521 . 1 248 TCP Transcription Factor Family AT5G08330 55.3 3.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45676 PF02365 NAM 1.80E-23 No_clan Cone TF