Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0036 ATGAATGCCTTCTATGGTCATCATCATCACATCGTGAGTTCAAATAATGGATTTTTGGGATTGAAGATTAGCCATGATAATAATGGAGGAGAAGGAAGAGATGTGTCTCATCATCAGCATCAGCATCAAGGTGATTATGTGGAATCAAGTGATCATATTGATGAGGAAGGAGGTAAAAAGAAGAAGGGGGAGAAGAAGATAAGAAAGGCAAGATGCGCTTTTCAAACGAGGAGCCAGGTTGATATTCTTGACGATGGTTATCGTTGGCGAAAATATGGTCAGAAGGCTGTTAAGAACAACAAATTTCCCAGGAGCTATTATCGATGCACATATCAAGGATGCAACGTAAAGAAGCAAGTTCAACGTCTAACAAGAGATGAAGGCGTAGTGGTGACTACATACGAAGGCATTCACTCACATCCAATCGACAAGCCCACCGACAACTTTGAGCATATCTTGAATCAGATGCAGATCTACACCCCCTTCTGA 489 41.51 MNAFYGHHHHIVSSNNGFLGLKISHDNNGGEGRDVSHHQHQHQGDYVESSDHIDEEGGKKKKGEKKIRKARCAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTRDEGVVVTTYEGIHSHPIDKPTDNFEHILNQMQIYTPF 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 196168 197102 + Conep02aG0003600.1 Cone2ag0036 432503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0036 162 Pfam WRKY DNA -binding domain 84 141 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0036 162 MobiDBLite consensus disorder prediction 27 62 - -
Cone2ag0036 162 Gene3D WRKY domain 67 143 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0036 162 FunFam WRKY transcription factor 57 69 143 - -
Cone2ag0036 162 SMART WRKY_cls 83 142 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0036 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 36 143 IPR044810 GO:0003700(InterPro)
Cone2ag0036 162 SUPERFAMILY WRKY DNA-binding domain 75 142 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0036 162 ProSiteProfiles WRKY domain profile. 78 143 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0036 162 MobiDBLite consensus disorder prediction 23 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0427 Cone-Chr15:2010547 Cone2ag0036 Cone-Chr2:196168 1.00E-40 dispersed
Cone2ag0036 Cone-Chr2:196168 Cone6ag0813 Cone-Chr6:4129505 1.47E-38 dispersed
Cone14ag0604 Cone-Chr14:2996493 Cone2ag0036 Cone-Chr2:196168 9.79E-62 transposed
Cone16ag1003 Cone-Chr16:9799442 Cone2ag0036 Cone-Chr2:196168 2.51E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45677 PF00035 dsrm 3.00E-14 CL0196 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0036 - - - 0.0