Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone2ag0049 | ATGGAGGAAGAAACTGTTAGTCTAAGAATGGAAGCAGAATCTGAAGAAGAAAAAGAAACAGAAATCAGTTCATTAAGTAATCCACTTCTGAAGAGAAACATAACACTATCATCTAGCCCACTAGCCATTGTCGGAGCCAAAGTTTCCCATATCGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCAGGATTGGAGAAGCAGATCCACAGTTCAAACGTTACAGTACATATTTCTGAAATGGAGTTTGGCATGTTTGGTCGGATTCCTAACTGGTATAATTGCCACTCTTATCAATCTTGCAGTAGAGAATATTGCTGGATACAAGATCCTTGCAATAGTTGCATTCATTGAGGAAGAAAGGTATTTATTGGGTTTTGTGTTTATGACAAGTGCAAATTTTCTTCTGACATTGAGTGCTGCTGTTCTCTGTGTTTGCTTTGCACCAACTGCTGCTGGTCCTGGTATACCAGAAATTAAAGCTTACCTTAATGGAGTTGATACTCCTAATATGTATGGTGCTAACACTCTCATTGTTAAGATATTTGGAAGCATTGGGGCTGTTTCTGCAGGATTAGATCTTGGCAAAGAAGGGCCTTTAGTTCATATAGGTGCTTGCATTGCTTCCTTATTGGGCCAAGGAGGGCCCGACAAATACCGGATCAAATCAGGATGGATCCGGTCTCTCAACAACGACCGCGACCGACGTGATCTCATAACTTGTGGGGCCTCCTCGGGAGTTTGTGCGGCTTTCCGGGCCCCGGTTGGTGGGGTCTTATTCTCTCTAGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTTCTTTGGAGAACCTTCTTTAGCACAGCAATAGTGGCAGTAGTTCTTAGAGCTTTCATTCAAATATGTAATTCTGGCGACTGCGGTCTTTTCGGACAAGGAGGGTTGGTTATGTTCGACGTGAGTAATGTTTTGGTCAGTTATCATGTAAAGGATATTATTCCGGTTTTTCTCGTTGGCATTATTGGAGGAGTTCTTGGAAGCCTTTATAACTACCTTCTGCACAAAGTCCTTATAGTTTACAGCCTCATCAATCAGAAGGGAAAAATACACAAAGTTCTACTTAGCCTAGTAATCTCACTCTTCACTTCACTATGCTTATACTTTCTCCCATTCCTAGCCAAATGCACGCCATGTGATCCGGCCACCCTTTCGGACTCCACTTGCCCTACAAATGGAAAATCCGGAAACTTCAAGCAATTCAATTGTCCAGATGGTTACTACAACGACTTAGCCACTCTACTTCTTACGACAAACGACGATGCTGTAAGGAACATATTCTCAACCAATACTCCAACAGAATACCACCCCCTATCCCTTATAATCTTCTTCGCCCTCTATTGTATCCTCGGATTGTTTACTTTCGGAATTGCCGTCCCTTCTGGACTCTTCCTCCCAATCATCTTAATAGGTGCAGCATATGGACGCCTTTTAGGTATAGTTTTGCGGTCTTATACAAGCATTGATCAAGGGCTTCTGGCAGTTCTAGGTGCCGCCTCACTCATGGCGGGCTCCATGAGAATGACAGTTTCGCTTTGTGTTATATTTCTCGAACTTACTAACAATGTTCGTTTACTTCCAATTACAATGGTAGTTCTTCTCATTGCAAAAAGTGTAGGAGATAGTATAAATCCAAGCATCTATGAGATCATACTTCACTTAAAAGGGTTACCATTTTTGGATGCAAATCCTGAACCATGGATGAGGAACGTAACCGTGGGCGACCTTTCAGGGGAAAAACCAGAAGTTGTGACATTTTCCGGGGTGGAAAAGGTGGGCCGGATTGTAGATGTGTTGAGAAATACTACACATAATGGGTTTCCAACAGTGGATGATGATGAATTGAAGGGGATAATTTTGAGGGCTCATTTGATACAAGTGTTGAAGAAGAAGTGGTTTTTAAAGGAGAAGAGGAGGAGAGAGGAGTGGGAAGTGAAGGAGAAGTTTACATGGGTTGAGTTATCAGAGAGAGAAGGGAGTATTGAGGAGGTAAGTGTGAGGAGTGAGGAAATGGACATGTTTGTTGATCTTCATCCATTGATTAACTCTACGCCTCATACAGTGGTGGAAACCATGTCTGCTGCTAAAGCTTTGGTGCTGTTCCGGCAACTGGGGTTGCGCCATCTGCTTGTTGTACCCAAATTTCATGCACCTGGGGTGGCTCCACTGGTTGGGATTTTGACCAGGCAAGATTTAAGGGCTTATAATATTTTGTCTGCCTTTCCTCATTTAGCAAGAGCAAAGGATGAAGAAAAAGGGGACTAA | 2310 | 42.81 | MEEETVSLRMEAESEEEKETEISSLSNPLLKRNITLSSSPLAIVGAKVSHIESLDYEINENDLFKQDWRSRSTVQTLQYIFLKWSLACLVGFLTGIIATLINLAVENIAGYKILAIVAFIEEERYLLGFVFMTSANFLLTLSAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANTLIVKIFGSIGAVSAGLDLGKEGPLVHIGACIASLLGQGGPDKYRIKSGWIRSLNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAIVAVVLRAFIQICNSGDCGLFGQGGLVMFDVSNVLVSYHVKDIIPVFLVGIIGGVLGSLYNYLLHKVLIVYSLINQKGKIHKVLLSLVISLFTSLCLYFLPFLAKCTPCDPATLSDSTCPTNGKSGNFKQFNCPDGYYNDLATLLLTTNDDAVRNIFSTNTPTEYHPLSLIIFFALYCILGLFTFGIAVPSGLFLPIILIGAAYGRLLGIVLRSYTSIDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNVRLLPITMVVLLIAKSVGDSINPSIYEIILHLKGLPFLDANPEPWMRNVTVGDLSGEKPEVVTFSGVEKVGRIVDVLRNTTHNGFPTVDDDELKGIILRAHLIQVLKKKWFLKEKRRREEWEVKEKFTWVELSEREGSIEEVSVRSEEMDMFVDLHPLINSTPHTVVETMSAAKALVLFRQLGLRHLLVVPKFHAPGVAPLVGILTRQDLRAYNILSAFPHLARAKDEEKGD | 769 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 247321 | 250094 | + | Conep02aG0005200.1 | Cone2ag0049 | 432516 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone2ag0049 | 769 | ProSiteProfiles | CBS domain profile. | 696 | 761 | IPR000644 | - | |
| Cone2ag0049 | 769 | SUPERFAMILY | CBS-domain pair | 579 | 749 | IPR046342 | - | |
| Cone2ag0049 | 769 | SUPERFAMILY | Clc chloride channel | 61 | 577 | IPR014743 | - | |
| Cone2ag0049 | 769 | Pfam | Voltage gated chloride channel | 141 | 555 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | Pfam | CBS domain | 697 | 749 | IPR000644 | - | |
| Cone2ag0049 | 769 | SMART | cbs_1 | 699 | 752 | IPR000644 | - | |
| Cone2ag0049 | 769 | SMART | cbs_1 | 597 | 644 | IPR000644 | - | |
| Cone2ag0049 | 769 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cone2ag0049 | 769 | FunFam | Chloride channel ClC3 | 75 | 393 | - | - | |
| Cone2ag0049 | 769 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 595 | 750 | - | - | |
| Cone2ag0049 | 769 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 748 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Cone2ag0049 | 769 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cone2ag0049 | 769 | CDD | ClC_6_like | 52 | 575 | - | - | |
| Cone2ag0049 | 769 | Gene3D | Clc chloride channel | 74 | 577 | - | - | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 183 | 202 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 474 | 494 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 524 | 543 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 506 | 522 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 152 | 169 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 562 | 576 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Chloride channel signature | 247 | 266 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0049 | 769 | Gene3D | - | 585 | 751 | IPR046342 | - | |
| Cone2ag0049 | 769 | PRINTS | Plant CLC chloride channel signature | 300 | 307 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Plant CLC chloride channel signature | 268 | 276 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Plant CLC chloride channel signature | 426 | 442 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Plant CLC chloride channel signature | 57 | 65 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0049 | 769 | PRINTS | Plant CLC chloride channel signature | 282 | 292 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0049 | Cone-Chr2:247321 | Cone8ag0780 | Cone-Chr8:7787359 | 5.38E-276 | dispersed | |
| Cone16ag0988 | Cone-Chr16:9739563 | Cone2ag0049 | Cone-Chr2:247321 | 2.86E-140 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone2ag0049 | K05016 | - | vvi:100260066 | 1190.25 |