Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0049 ATGGAGGAAGAAACTGTTAGTCTAAGAATGGAAGCAGAATCTGAAGAAGAAAAAGAAACAGAAATCAGTTCATTAAGTAATCCACTTCTGAAGAGAAACATAACACTATCATCTAGCCCACTAGCCATTGTCGGAGCCAAAGTTTCCCATATCGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCAGGATTGGAGAAGCAGATCCACAGTTCAAACGTTACAGTACATATTTCTGAAATGGAGTTTGGCATGTTTGGTCGGATTCCTAACTGGTATAATTGCCACTCTTATCAATCTTGCAGTAGAGAATATTGCTGGATACAAGATCCTTGCAATAGTTGCATTCATTGAGGAAGAAAGGTATTTATTGGGTTTTGTGTTTATGACAAGTGCAAATTTTCTTCTGACATTGAGTGCTGCTGTTCTCTGTGTTTGCTTTGCACCAACTGCTGCTGGTCCTGGTATACCAGAAATTAAAGCTTACCTTAATGGAGTTGATACTCCTAATATGTATGGTGCTAACACTCTCATTGTTAAGATATTTGGAAGCATTGGGGCTGTTTCTGCAGGATTAGATCTTGGCAAAGAAGGGCCTTTAGTTCATATAGGTGCTTGCATTGCTTCCTTATTGGGCCAAGGAGGGCCCGACAAATACCGGATCAAATCAGGATGGATCCGGTCTCTCAACAACGACCGCGACCGACGTGATCTCATAACTTGTGGGGCCTCCTCGGGAGTTTGTGCGGCTTTCCGGGCCCCGGTTGGTGGGGTCTTATTCTCTCTAGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTTCTTTGGAGAACCTTCTTTAGCACAGCAATAGTGGCAGTAGTTCTTAGAGCTTTCATTCAAATATGTAATTCTGGCGACTGCGGTCTTTTCGGACAAGGAGGGTTGGTTATGTTCGACGTGAGTAATGTTTTGGTCAGTTATCATGTAAAGGATATTATTCCGGTTTTTCTCGTTGGCATTATTGGAGGAGTTCTTGGAAGCCTTTATAACTACCTTCTGCACAAAGTCCTTATAGTTTACAGCCTCATCAATCAGAAGGGAAAAATACACAAAGTTCTACTTAGCCTAGTAATCTCACTCTTCACTTCACTATGCTTATACTTTCTCCCATTCCTAGCCAAATGCACGCCATGTGATCCGGCCACCCTTTCGGACTCCACTTGCCCTACAAATGGAAAATCCGGAAACTTCAAGCAATTCAATTGTCCAGATGGTTACTACAACGACTTAGCCACTCTACTTCTTACGACAAACGACGATGCTGTAAGGAACATATTCTCAACCAATACTCCAACAGAATACCACCCCCTATCCCTTATAATCTTCTTCGCCCTCTATTGTATCCTCGGATTGTTTACTTTCGGAATTGCCGTCCCTTCTGGACTCTTCCTCCCAATCATCTTAATAGGTGCAGCATATGGACGCCTTTTAGGTATAGTTTTGCGGTCTTATACAAGCATTGATCAAGGGCTTCTGGCAGTTCTAGGTGCCGCCTCACTCATGGCGGGCTCCATGAGAATGACAGTTTCGCTTTGTGTTATATTTCTCGAACTTACTAACAATGTTCGTTTACTTCCAATTACAATGGTAGTTCTTCTCATTGCAAAAAGTGTAGGAGATAGTATAAATCCAAGCATCTATGAGATCATACTTCACTTAAAAGGGTTACCATTTTTGGATGCAAATCCTGAACCATGGATGAGGAACGTAACCGTGGGCGACCTTTCAGGGGAAAAACCAGAAGTTGTGACATTTTCCGGGGTGGAAAAGGTGGGCCGGATTGTAGATGTGTTGAGAAATACTACACATAATGGGTTTCCAACAGTGGATGATGATGAATTGAAGGGGATAATTTTGAGGGCTCATTTGATACAAGTGTTGAAGAAGAAGTGGTTTTTAAAGGAGAAGAGGAGGAGAGAGGAGTGGGAAGTGAAGGAGAAGTTTACATGGGTTGAGTTATCAGAGAGAGAAGGGAGTATTGAGGAGGTAAGTGTGAGGAGTGAGGAAATGGACATGTTTGTTGATCTTCATCCATTGATTAACTCTACGCCTCATACAGTGGTGGAAACCATGTCTGCTGCTAAAGCTTTGGTGCTGTTCCGGCAACTGGGGTTGCGCCATCTGCTTGTTGTACCCAAATTTCATGCACCTGGGGTGGCTCCACTGGTTGGGATTTTGACCAGGCAAGATTTAAGGGCTTATAATATTTTGTCTGCCTTTCCTCATTTAGCAAGAGCAAAGGATGAAGAAAAAGGGGACTAA 2310 42.81 MEEETVSLRMEAESEEEKETEISSLSNPLLKRNITLSSSPLAIVGAKVSHIESLDYEINENDLFKQDWRSRSTVQTLQYIFLKWSLACLVGFLTGIIATLINLAVENIAGYKILAIVAFIEEERYLLGFVFMTSANFLLTLSAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANTLIVKIFGSIGAVSAGLDLGKEGPLVHIGACIASLLGQGGPDKYRIKSGWIRSLNNDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAIVAVVLRAFIQICNSGDCGLFGQGGLVMFDVSNVLVSYHVKDIIPVFLVGIIGGVLGSLYNYLLHKVLIVYSLINQKGKIHKVLLSLVISLFTSLCLYFLPFLAKCTPCDPATLSDSTCPTNGKSGNFKQFNCPDGYYNDLATLLLTTNDDAVRNIFSTNTPTEYHPLSLIIFFALYCILGLFTFGIAVPSGLFLPIILIGAAYGRLLGIVLRSYTSIDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNVRLLPITMVVLLIAKSVGDSINPSIYEIILHLKGLPFLDANPEPWMRNVTVGDLSGEKPEVVTFSGVEKVGRIVDVLRNTTHNGFPTVDDDELKGIILRAHLIQVLKKKWFLKEKRRREEWEVKEKFTWVELSEREGSIEEVSVRSEEMDMFVDLHPLINSTPHTVVETMSAAKALVLFRQLGLRHLLVVPKFHAPGVAPLVGILTRQDLRAYNILSAFPHLARAKDEEKGD 769
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 247321 250094 + Conep02aG0005200.1 Cone2ag0049 432516
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0049 769 ProSiteProfiles CBS domain profile. 696 761 IPR000644 -
Cone2ag0049 769 SUPERFAMILY CBS-domain pair 579 749 IPR046342 -
Cone2ag0049 769 SUPERFAMILY Clc chloride channel 61 577 IPR014743 -
Cone2ag0049 769 Pfam Voltage gated chloride channel 141 555 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 Pfam CBS domain 697 749 IPR000644 -
Cone2ag0049 769 SMART cbs_1 699 752 IPR000644 -
Cone2ag0049 769 SMART cbs_1 597 644 IPR000644 -
Cone2ag0049 769 MobiDBLite consensus disorder prediction 1 24 - -
Cone2ag0049 769 FunFam Chloride channel ClC3 75 393 - -
Cone2ag0049 769 CDD CBS_pair_voltage-gated_CLC_euk_bac 595 750 - -
Cone2ag0049 769 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 748 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
Cone2ag0049 769 MobiDBLite consensus disorder prediction 1 22 - -
Cone2ag0049 769 CDD ClC_6_like 52 575 - -
Cone2ag0049 769 Gene3D Clc chloride channel 74 577 - -
Cone2ag0049 769 PRINTS Chloride channel signature 183 202 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 474 494 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 152 169 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 PRINTS Chloride channel signature 247 266 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone2ag0049 769 Gene3D - 585 751 IPR046342 -
Cone2ag0049 769 PRINTS Plant CLC chloride channel signature 300 307 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone2ag0049 769 PRINTS Plant CLC chloride channel signature 268 276 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone2ag0049 769 PRINTS Plant CLC chloride channel signature 426 442 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone2ag0049 769 PRINTS Plant CLC chloride channel signature 57 65 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Cone2ag0049 769 PRINTS Plant CLC chloride channel signature 282 292 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0049 Cone-Chr2:247321 Cone8ag0780 Cone-Chr8:7787359 5.38E-276 dispersed
Cone16ag0988 Cone-Chr16:9739563 Cone2ag0049 Cone-Chr2:247321 2.86E-140 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0049 K05016 - vvi:100260066 1190.25