Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0127 ATGGAGGGGAATTGGGTTAATGAGCTTCATTCAGATTTTATTCAGAAATTTTTCCGGGTGCTAGCTTTATGTCATACAGCTGTTCCGGTTGTAAATGAAGAGATAGGAGAGATTTCTTATGAGGCGGAGTCACCTGATGAAGCGGCTTTTGTTATAGCTGCAAGGGAGCTCGGGTTCGAGTTTTTCGAACGGACTCAAACGAGCATTTCTTTGCGGGAGTTAGATTTTGCAAACGGGAAAAAGGTTGAAAGAGTGTACGAGCTTCTTCAGGTCTTAGAGTTCAGTAGTTCTCGGAAAAGAAGGTCAGTCATTGTAAGAAATCCGGAAAATCAACTATTGCTCCTCTCTAAAGGTGCAGATAGTGTAATGTTTGAGAGGTTATCAAAAGACGGTAGGATGTTTGAGACGGAGACAAAAGAGCAGATCAAAGAATATTCCGAAGCAGGGCTTAGAACCTTGGTAGTTACATGCCGCGAGCTGGATGAAGTAGAGTACAAGAAATGGGAAGACAAGTTCTTAAAGGCCAAAACTGCCGTCACAGCAGACCGAGATGTGTTAATGGACACAATTGCAGATGATATCGAAAGAAACTTAATCCTTCTCGGTGCTACTGCTGTTGAAGACAAACTCCAGAAGGGGGTGCCGGAATGCATTGACAAGCTTGCTCAAGCCGGAATCAAGATATGGGTATTGACCGGGGATAAGATGGAAACTGCTGTTAATATCGGGTATGCTTGTAGCTTACTTAGAAAAGATATGAAACAAATAGTGATCACACTTGATTCTCGGGAAATTGATATTTTGGAAAAACATGGCGAAAAGGCAGCTATTGAGAAGGCATTTCTTGAGAGTGTGAGAAAGCAAATTAGAGAAGGAATGTCTCAAATCACTGACAGCAAAAAAAGTGAAGAAAAGTCTTCTTTCAGCTTAGTAGTTGACGGAAAGTCATTGGATTTTGCTCTCAAATCTGTGGAGAAGTCATTTTTTGAGATTGCAGCCAGTTGTACTTCTGTCATATGCTGTCGTTCTTCGCCTAAACAAAAAGCCCTTGTTACGAGAATGGTCAAACAACGAACGGGTAAAACAACATTATCAGTAGGTGATGGAGCAAATGATGTGGGAATGCTTCATGAGGCTGACATTGGAGTTGGCATTAGTGGTGTTGAAGGGATGCAGGCAGTTATGGCTAGTGATTACGCAATAGCTCAGTTTCGGTTTCTGGAACGTCTATTGCTAGTACACGGTCATTGGTGTTACCGGCGAATAACCATGATGATATGCTACTTCTTCTACAAGAACATTACATTCGGGTTCACGCTATTTTGGTACGAGGCCTATACTTCTTTTTCCGGTCAACCGGCTTATAATGATTGGTACATGTCGTTCTATAATGTCTTCTTCACTTCACTTCCCGTCATTGCCCTTGGTGTCTTTGATCAAGATGTTTCCGCTCGGCTTTGCCTCAAGTATCCGATCTTGTACTTAGAGGGAGTAGAAAACGTGCTCTTCAGTTGGCCCCGAATCCACGGTTGGATGTTTAATGGACTTCTAAGCTCCATAATCATCTACTTCTTCACAATCAACTCTATGATCCCTCAAGCCTTCCGTAAAGACGGTCAAGTCGTCGACTATGAAGTCCTAGGCGTCACAATGTACACTTGCATCGTGTGGACAGTAAATTGCCAGATGGCACTCTCGATTAACTACTTCACTTGGATCCAACACCTCTTCATTTGGGGCAGCATTGCATTTTGGTATCTATTTCTGTTGATCTACGGCTCTCTTCCCCCAACCATTTCCACAACGGCTTATAAGGTTCTTGTCGAAGCTTGTGTCCCAAGGATCCTCTATTGGTTGGTTACTATCTTTGTTGTTGTTTCCGCTCTTCTCCCTTATTTCTGTTATAGGTCTTTTCAGACCAGGTTTTTGCCCATGTACCATGATGTAATACAAAGAAACCGATTAGAAGGCGCGGAAGGGGTCGGAACAGAAGGGTATATCGAATTGCCGGTTCGCGTCATGGACAGGTTGGTACATTTGAAGGAGAGATTAAGGCGGAGAGATTTGTGA 2070 43.0 MEGNWVNELHSDFIQKFFRVLALCHTAVPVVNEEIGEISYEAESPDEAAFVIAARELGFEFFERTQTSISLRELDFANGKKVERVYELLQVLEFSSSRKRRSVIVRNPENQLLLLSKGADSVMFERLSKDGRMFETETKEQIKEYSEAGLRTLVVTCRELDEVEYKKWEDKFLKAKTAVTADRDVLMDTIADDIERNLILLGATAVEDKLQKGVPECIDKLAQAGIKIWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSREIDILEKHGEKAAIEKAFLESVRKQIREGMSQITDSKKSEEKSSFSLVVDGKSLDFALKSVEKSFFEIAASCTSVICCRSSPKQKALVTRMVKQRTGKTTLSVGDGANDVGMLHEADIGVGISGVEGMQAVMASDYAIAQFRFLERLLLVHGHWCYRRITMMICYFFYKNITFGFTLFWYEAYTSFSGQPAYNDWYMSFYNVFFTSLPVIALGVFDQDVSARLCLKYPILYLEGVENVLFSWPRIHGWMFNGLLSSIIIYFFTINSMIPQAFRKDGQVVDYEVLGVTMYTCIVWTVNCQMALSINYFTWIQHLFIWGSIAFWYLFLLIYGSLPPTISTTAYKVLVEACVPRILYWLVTIFVVVSALLPYFCYRSFQTRFLPMYHDVIQRNRLEGAEGVGTEGYIELPVRVMDRLVHLKERLRRRDL 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 611123 672439 + Conep02aG0013200.1 Cone2ag0127 432594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0127 689 Pfam Phospholipid-translocating P-type ATPase C-terminal 394 644 IPR032630 -
Cone2ag0127 689 NCBIfam phospholipid-translocating P-type ATPase 4 652 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cone2ag0127 689 SUPERFAMILY Calcium ATPase, transmembrane domain M 415 644 IPR023298 -
Cone2ag0127 689 NCBIfam HAD-IC family P-type ATPase 332 448 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone2ag0127 689 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 2 203 IPR023299 GO:0000166(InterPro)
Cone2ag0127 689 SUPERFAMILY HAD-like 195 414 IPR036412 -
Cone2ag0127 689 Gene3D - 43 174 IPR023299 GO:0000166(InterPro)
Cone2ag0127 689 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 10 648 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cone2ag0127 689 FunFam Phospholipid-transporting ATPase 43 201 - -
Cone2ag0127 689 Pfam Cation transport ATPase (P-type) 22 128 - -
Cone2ag0127 689 Gene3D - 197 406 IPR023214 -
Cone2ag0127 689 FunFam Phospholipid-transporting ATPase 201 406 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0123 Cone-Chr2:591571 Cone2ag0127 Cone-Chr2:611123 3.97E-267 dispersed
Cone2ag0127 Cone-Chr2:611123 Cone6ag0484 Cone-Chr6:2412016 4.30E-301 dispersed
Cone2ag0125 Cone-Chr2:600969 Cone2ag0127 Cone-Chr2:611123 4.95E-265 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0127 K01530 - gmx:100779714 1065.06