Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0135 ATGGAGTCAGGCCGGTTTTTGTTCGATCACTCTGCTTCTTCCCATGGCAATATGCTCTACCTCGGGAATAACGATTTCGTTTTTCGAGGAGCAAGAACGATGATGAGCATGGAGGAAAATTCAAAGAGACGATCATTTTTCAGCTCGGCGGAGGAGCTGTACGACGACGAATATTACGATGAGCAGCTGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTACATCTGCTGGAGAAGAGCTTTGAGGCAGAGAACAAGCTGGAGCCAGAGCGAAAGACCCAGTTGGCTAAGAAGCTCGGGTTGCAGCCGAGGCAGGTGGCTGTCTGGTTCCAAAACCGCCGAGCAAGGTGGAAGACTAAGCAGCTCGAAAGAGATTATGATCTCCTCAAATCATCATATGACACGCTTCTTTCAGATTTCGACTCCGTTTTGAAAGAAAATGAGAAGCTCAAATATGAGGTGGTTTCCTTGACGGAGAAACTTCAATCTAAAGAGGGGTCCAAAACACCGACTCAACTGACCAAGCCCGCGCCTCATATAACAGATCTTACTGAAATCCCTGCCTTCCAGTTGAATGTGAAGGTGGAGGATCGTCTGAGCTCAGGGACAGGTGGAAGTGCAGTACTGGACGAGGATGGTCCACAGCTGCTAGACAGTGGTGATTCTTATTTTCCGAACAATGAGTATCCAAACTGTATGATGCCGGTTGACGGTGTATCGGAGGAAGATGATGGTAGTGATGATGGGCGAGGTTACTTCCCGAATGTTTTTGGTTCGACCGGGCAGGAGAACAACACTGCTGAGGAAGGAGAGCCTTTGGGTTGGTGGGTCTGGTCCTGA 843 49.7 MESGRFLFDHSASSHGNMLYLGNNDFVFRGARTMMSMEENSKRRSFFSSAEELYDDEYYDEQLPEKKRRLTSEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSDFDSVLKENEKLKYEVVSLTEKLQSKEGSKTPTQLTKPAPHITDLTEIPAFQLNVKVEDRLSSGTGGSAVLDEDGPQLLDSGDSYFPNNEYPNCMMPVDGVSEEDDGSDDGRGYFPNVFGSTGQENNTAEEGEPLGWWVWS 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 717434 719504 + Conep02aG0014000.1 Cone2ag0135 432602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0135 280 SUPERFAMILY Homeodomain-like 66 132 IPR009057 -
Cone2ag0135 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone2ag0135 280 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Cone2ag0135 280 Pfam Homeodomain 66 119 IPR001356 GO:0003677(InterPro)
Cone2ag0135 280 Gene3D - 59 127 - -
Cone2ag0135 280 SMART HOX_1 64 125 IPR001356 GO:0003677(InterPro)
Cone2ag0135 280 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0135 280 CDD homeodomain 66 122 IPR001356 GO:0003677(InterPro)
Cone2ag0135 280 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677(InterPro)
Cone2ag0135 280 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677(InterPro)
Cone2ag0135 280 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone2ag0135 280 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0192 Cone-Chr10:952016 Cone2ag0135 Cone-Chr2:717434 1.25E-21 dispersed
Cone19ag0090 Cone-Chr19:519877 Cone2ag0135 Cone-Chr2:717434 1.41E-35 dispersed
Cone19ag0959 Cone-Chr19:7311391 Cone2ag0135 Cone-Chr2:717434 3.48E-27 dispersed
Cone1ag1012 Cone-Chr1:55081851 Cone2ag0135 Cone-Chr2:717434 4.08E-20 dispersed
Cone2ag0135 Cone-Chr2:717434 Cone6ag0604 Cone-Chr6:2966504 4.73E-27 dispersed
Cone16ag0919 Cone-Chr16:9435684 Cone2ag0135 Cone-Chr2:717434 2.69E-144 wgd
Cone2ag0135 Cone-Chr2:717434 Cone6ag0614 Cone-Chr6:3041427 8.75E-26 wgd
Cone2ag0135 Cone-Chr2:717434 Cone9ag0617 Cone-Chr9:2933324 1.67E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45683 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0135 K09338 - rcu:8269319 369.777