Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0153 ATGGAGTTTCAAGAGGGTTTAATGAAGTTGATGATTCAGAAAAATGGTGAAGCAGAAAGATTTTCAGAGCTGATTACAAGCAGCCCAAAGCGAATATGGAGATTCTTCCACCGATCATCTTCAACAATTCCGTCTAGACCTCTAAAAAATCAAACTCCAGAAGAGTTCATCTGCCCAATGTCTCGGTCTTTAATGGCGGAACCAGTTATCGTCACCTCTGGACAAACATTCGAAGCTGCATGCGTTCAGGTATGCAAAAGTCTAAGCTTTACTCCAATTCTCGTAGACGGCTCCTCACCTGATTTCTCCTCCGTAATCCCAAACCGTGCTCTAAAATCCACCATTTTCAACTGGTGCAAGAATTCCTCCATCGATTTTCCCAAACCGCTTGATTTCATCTCCGCCGAGAAGCTCGTCCGCACATCCATGGCTTCGCAGAAGCAAAATCCCAACACTCGTAACAGAACCGACAAGGAATTGATTCAAGGAGTTGCAGAAAATCCTAATGTACATTTCAACCACGCCGCCACAGAGGTAACTCGCCGCCGGCCAGCTCACTTCTACTCATCGAGCTCGGAAGAATCGGTGAACGCGAAAAAATCCTCATCTACTCCACTCCCGTTAAAAACTCGTCCGAGCTGCTACTCCTCTCCTTCTTCTTCCTCCTCCGAAATCGAAACCCTAAACCCCAACTCGCCGGAAGAAGAAGAGATCTTTACTAAACTCAGAAGCACACAAGTTTACGATGTAGAAGAAGCCGTGATCTCTCTGAGAAACATCACACGGACCAGAGAAGACCTACGGGCCCACCTCTGCACCTCTCGGCTGCTCTCCGCCCTCCGATCACAAATCGTCTCGAGATACGCTGCCATTCAGGTGAACTCAGTTGCAGCTCTAGTGAATCTCTCTCTGGAGAAACACAACAAGGTGAAGATCGTGCGGTCCGGAATCGTTCCTAATCTAATCAACATTTTGAGGTGCGGATCCTCTGAGGTGCAGGAACATGCTTCTGGTGCACTCTTCAGCTTGGCTCTTGATGATAACAACAAGACTGCGATCGGTGTGCTAGGTGCATTACCACCCCTAATCCGAATGCTCCGGTCCGAAAATGAGTGGGCCCGGCACGACTCGGCTCTGGCCCTATACCACCTTTCACTTGTCCAAAGCAACCGGTCCAAGCTCGTTAAACTTGGTTCTGTCCCGACATTGTTAGCCATGTTTAAGTCCGGTCATATGATGAGTCCGGTCCTACTTATACTATGCAATTTGGCTTCGTGTGGGGATGGGAGGGCTGTGTTGATGGACTCGGGTGCGGTCAAGTGTATGGTAGAGAAGCTAAGGGGGGATGAGCTGAGTTGCGAATCAGCTCGAGAGAGTTGCATTGCGGTTCTATACGGGCTGAGCCAGGGTGGGCTGAGGTTCAAGGGGTTGGCTAAGTCAGTTGGATTGGCAGAGGTGTTGACAAAGGTGGATAAAACATGGAGCGAGAGGGCAAGAGAGAAGGCGAGGAGGATAAATGATGTGATGAAAGGGAGGGTGGATGAGGAAGAGGAGGATGTGAATTGGGAGGAGTTGCTTGAATCGGGGTTCGAAAGTCGGAACCGGAGTCGCATTGGTGGCGAGTGGGATGAGTCCGGTGCTAACTCATCCCAATTTTGA 1659 49.37 MEFQEGLMKLMIQKNGEAERFSELITSSPKRIWRFFHRSSSTIPSRPLKNQTPEEFICPMSRSLMAEPVIVTSGQTFEAACVQVCKSLSFTPILVDGSSPDFSSVIPNRALKSTIFNWCKNSSIDFPKPLDFISAEKLVRTSMASQKQNPNTRNRTDKELIQGVAENPNVHFNHAATEVTRRRPAHFYSSSSEESVNAKKSSSTPLPLKTRPSCYSSPSSSSSEIETLNPNSPEEEEIFTKLRSTQVYDVEEAVISLRNITRTREDLRAHLCTSRLLSALRSQIVSRYAAIQVNSVAALVNLSLEKHNKVKIVRSGIVPNLINILRCGSSEVQEHASGALFSLALDDNNKTAIGVLGALPPLIRMLRSENEWARHDSALALYHLSLVQSNRSKLVKLGSVPTLLAMFKSGHMMSPVLLILCNLASCGDGRAVLMDSGAVKCMVEKLRGDELSCESARESCIAVLYGLSQGGLRFKGLAKSVGLAEVLTKVDKTWSERAREKARRINDVMKGRVDEEEEDVNWEELLESGFESRNRSRIGGEWDESGANSSQF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 794797 797065 - Conep02aG0015800.1 Cone2ag0153 432620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0153 552 ProSiteProfiles U-box domain profile. 51 125 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0153 552 SMART Ubox_2 55 118 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0153 552 SMART arm_5 346 386 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 SMART arm_5 426 469 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 SMART arm_5 305 345 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 SMART arm_5 264 304 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 SMART arm_5 387 425 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 Pfam U-box domain 53 122 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone2ag0153 552 FunFam RING-type E3 ubiquitin transferase 233 509 - -
Cone2ag0153 552 Pfam Armadillo/beta-catenin-like repeat 307 344 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 MobiDBLite consensus disorder prediction 183 233 - -
Cone2ag0153 552 Gene3D - 231 505 IPR011989 -
Cone2ag0153 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 353 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 MobiDBLite consensus disorder prediction 184 229 - -
Cone2ag0153 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 124 IPR013083 -
Cone2ag0153 552 Coils Coil 499 519 - -
Cone2ag0153 552 MobiDBLite consensus disorder prediction 530 552 - -
Cone2ag0153 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515(InterPro)
Cone2ag0153 552 PANTHER U BOX DOMAIN-CONTAINING 34 509 - -
Cone2ag0153 552 SUPERFAMILY RING/U-box 49 129 - -
Cone2ag0153 552 SUPERFAMILY ARM repeat 242 468 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0120 Cone-Chr13:709968 Cone2ag0153 Cone-Chr2:794797 6.58E-91 dispersed
Cone2ag0153 Cone-Chr2:794797 Cone8ag0150 Cone-Chr8:776871 1.77E-09 dispersed
Cone16ag0127 Cone-Chr16:718916 Cone2ag0153 Cone-Chr2:794797 2.73E-98 wgd
Cone16ag0900 Cone-Chr16:9344124 Cone2ag0153 Cone-Chr2:794797 2.54E-280 wgd
Cone19ag0122 Cone-Chr19:685798 Cone2ag0153 Cone-Chr2:794797 1.07E-85 wgd
Cone2ag0153 Cone-Chr2:794797 Cone2ag0881 Cone-Chr2:34729517 8.37E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0153 - - - 0.0