Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0165 ATGAAGAAATCCAGCTTTTTCTTCATCTGGGTCAATCTGTTTCTTCTTCTACTATCTTTACTACTTGCAGAAGACGACGTCAAATGCCTTCAAGGCATAAAGAATTCACTAACCGATCCTCAAATGAAGCTAAGCTCATGGAAATTCGCCAACAGATCCGTCGGTTTCATCTGCAACTTCGTCGGCGTTTCCTGCTGGAACAGCCGTGAAAATCGCATAATCAGCCTCGAGCTACGAGATATGAAGCTTTCCGGCGAAGTTCCGGCCGACCTCGAATACTGTTCCAGCCTCCAAAATCTTGATCTTTCCGACAACAGTCTCGCCGGATCAATCCCCGCCGGTTTGTGCAAATGGGTTCCTTTTTTGGTAACTTTAGATTTATCAAACAACGATTTTTCAGGCCCAATACCTGTCAATCTCTCAAAATGTTCATACTTGAACAAATTGGTTTTGTCTAATAATAAGCTTTCTGGGTCTATTCCGTATGAAATTTCTAATCTAAATAGGCTTAGTAAGTTCTCTGTTGATAATAATGAACTTACTGGAACTATTCCTTCGTCTTTTGGTAAATTTGATAAGGCTGATTTTGAAGGGAATAAGGAGCTTTGTGGGGGGCCACTCGGATCGAATTGTGGCAAATTGAGTAAGAAAAGCCTTGCAATTATAATCTCAGCTGGTGTTATAGGTGCTGCTATTTCCTTGTTGTTAGCTTTCGGGTTGTTTTGGAGGTATCATATGAAACAAAGTAAGAAGAGGAAGAAAAGAGGATCTGGATTTGGACAAGGAGAAGAAGCCGATTGGGCCGAGAAGTTGCGCTCACATAAACTTGTTCAAGTTACATTGTTTCAAAAGCCTATAGTGAAACTTAAACTGTCCGGTTTGATGGCTTCTACGAACAACTTCAATCCTGAAAACATAATCGTTTCGACCCGAACAGGGACAACTTACAAGGCAACTCTACAAGATGGATCTTCATTGGCTATAAAACGGCTTAATACCTGTAAGCTAGGCGATAAGCAATTTCAGGCCGAAATGAACCGATTAGGACAACTTAGGAGGCCTAATCTAGCACCTCTTTTAGGATTTTGTATCATAGAAGATGAAAAGCTCTTGGTTTATAAGTACATGTCAAATGGGACTTTGTATTCTTTGTTACATGGAACTGGGGAGAGGTTGGATTGGACAACTAGGTTTAAGATCGGGCTAGGTGCAGCTAAGGGTCTTGCTTGGCTTCACCATGAATGCCAACCACCATTGATGCATCAAAACATATGCTCAAATGTGATACTTGTAGATGAAGATTTTGATGCTAGGATAATGGATTGTGGGTTAGCTAATTTGATGAAGAATGATTCAAATGGGAGCTTTGTTAATGGGGATTTAGGGGAATTTGGATACATTGCGCCGGAATATTCGAGCACTATGGTTGCCTCATTGAAAGGTGATGTTTACGGATTTGGGGTCGTGCTTTTGGAGTTAGTAACGGGGCAAAAGCCACTTGGGATTGACCGGACAGAGGAGGAGTATAAGGGGAAGAATTTGGTAGATTGGGTTAATTTGTTAAGTGGGAGTAGTAGAGTGAAAGATGTTATAGATAAAGAGCTTTGTGGGAAGGGAAATGATGAGGAGATTTTGGAGTTCATGAAGATTGCTTGTAATTGTGTTCTTCCACGACCGAAGGAGAGGTGGTCTATGTACCGGGTTCATCGGGCATTGAAGAGTTTGAGTACGGGCCGGAATTCAGGCGAACCGGAAAATGAATTTTTTCTTGTTGAGGGGAAGATGGATGTCGGTTTGATTTAG 1803 41.54 MKKSSFFFIWVNLFLLLLSLLLAEDDVKCLQGIKNSLTDPQMKLSSWKFANRSVGFICNFVGVSCWNSRENRIISLELRDMKLSGEVPADLEYCSSLQNLDLSDNSLAGSIPAGLCKWVPFLVTLDLSNNDFSGPIPVNLSKCSYLNKLVLSNNKLSGSIPYEISNLNRLSKFSVDNNELTGTIPSSFGKFDKADFEGNKELCGGPLGSNCGKLSKKSLAIIISAGVIGAAISLLLAFGLFWRYHMKQSKKRKKRGSGFGQGEEADWAEKLRSHKLVQVTLFQKPIVKLKLSGLMASTNNFNPENIIVSTRTGTTYKATLQDGSSLAIKRLNTCKLGDKQFQAEMNRLGQLRRPNLAPLLGFCIIEDEKLLVYKYMSNGTLYSLLHGTGERLDWTTRFKIGLGAAKGLAWLHHECQPPLMHQNICSNVILVDEDFDARIMDCGLANLMKNDSNGSFVNGDLGEFGYIAPEYSSTMVASLKGDVYGFGVVLLELVTGQKPLGIDRTEEEYKGKNLVDWVNLLSGSSRVKDVIDKELCGKGNDEEILEFMKIACNCVLPRPKERWSMYRVHRALKSLSTGRNSGEPENEFFLVEGKMDVGLI 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 885313 887570 + Conep02aG0017000.1 Cone2ag0165 432632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0165 600 Gene3D Phosphorylase Kinase; domain 1 262 375 - -
Cone2ag0165 600 Gene3D Transferase(Phosphotransferase) domain 1 376 589 - -
Cone2ag0165 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 23 212 - -
Cone2ag0165 600 Gene3D Ribonuclease Inhibitor 23 213 IPR032675 -
Cone2ag0165 600 SUPERFAMILY L domain-like 24 201 - -
Cone2ag0165 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Cone2ag0165 600 Pfam Protein tyrosine and serine/threonine kinase 313 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0165 600 ProSiteProfiles Protein kinase domain profile. 301 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0165 600 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Cone2ag0165 600 Pfam Leucine rich repeat N-terminal domain 24 66 IPR013210 -
Cone2ag0165 600 Pfam Leucine Rich Repeat 170 190 IPR001611 GO:0005515(InterPro)
Cone2ag0165 600 Pfam Leucine Rich Repeat 96 117 IPR001611 GO:0005515(InterPro)
Cone2ag0165 600 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Cone2ag0165 600 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515(InterPro)
Cone2ag0165 600 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 376 585 - -
Cone2ag0165 600 PANTHER RECEPTOR-LIKE PROTEIN 55 71 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0165 Cone-Chr2:885313 Cone3ag0598 Cone-Chr3:2962451 2.85E-135 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone2ag0165 Cone-Chr2:885313 2.71E-249 wgd
Cone13ag1003 Cone-Chr13:8424072 Cone2ag0165 Cone-Chr2:885313 6.42E-210 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone2ag0165 Cone-Chr2:885313 0 wgd
Cone18ag1340 Cone-Chr18:9262250 Cone2ag0165 Cone-Chr2:885313 3.23E-255 wgd
Cone19ag0996 Cone-Chr19:7471069 Cone2ag0165 Cone-Chr2:885313 8.69E-214 wgd
Cone2ag0165 Cone-Chr2:885313 Cone4ag0601 Cone-Chr4:2748905 5.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82591 PF00249 Myb_DNA-binding 1.70E-17 CL0123 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0165 - - - 0.0