Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0181 ATGGGTTCTATAAAGTTGAGAGAATTTGTGTTAATAGCCTGCTTAACCGCATTGATACCTACCCTTTATGCTCTTACAACTCCCGATGATAAATACTGGCATGATAGAATGCTTGCTGCCAGGGAGGCTACCAATAAGGCTGCCCACCCTAACCCTTTGAAGCAAACCCACCACTTCAACTTACATGCTCATAGGAGGATGCAGGGCATGAATCTCACACACATAGCAAGGAACCTAAGGAGTACCGGGAGTTGCGTGGCATCTAATCCAATCGATAAATGTTGGAGATGCGACCCAGATTGGGAGGCTAATCGAAAGAAGCTTGCATCGTGCGTAATGGGTTTTGGACGCGGGACTACAGGAGGCGCAGCTGGTGAAATCTACGTGGTAACCGACCCATCAGATAACGACTTGATGGATCCTAAACCCGGTACTCTCCGATATGGTTGCCTCCAAGAAAAACCACTTTGGATCATATTCAAGCAAGACATGAACATCAAATTGAGAGGGGAGCTTATGTTGACACCTGACAAGACCATTGACGGGCGTGGAGCTAAAGTTCACATTGCAAATGGTGGTTCGTTTAACATATTTCTAACGAAGAATATCATCATTCACGGGCTGCACATCCACAATATTGTAGGTCTCCCTGGAGGCCGTACTATCAGAGACTCCCCAGAACACAAGGGAACAAGGGGTCCGTCAGACGGTGATGCTATTGGCATCTTTGGATCATCACATGTCTGGATTGATCATGTCTCCTTTAGTACCTGTGAAGATGGGCTTGTCGATGCTATTAACGGATCCACTGCTATTACTATATCGAACTCTCATTTCACAAAGCATGATCATGTCATTTTATTGGGAGCCAGTGATTCTAACGTCGATGATGCAAAGATGCAAGTCACAGTTGCTTATAATCATTTCGATAAAGGTTTGGTCCAAAGGATGCCTAGAGGTAGATCGGGTTTCTTCCATGTTGTTAACAATGATTATACTGAGTGGGAAATGTATGCCATTGGTGGAACCCATAATCCTACCATTATGAGCCAGGGTAATCGCTTCTACGCTCCAAATAACCCTAATGCAAAGCAAGTGACATCACAAAACAAAGGTTGTCCACAATCAGAGTGGAAGAATTGGAAATGGAGCACAGAGGGAGATCTACTGTTGAACGGAGCAATATTTTTTCAATCCGGAGGAAGTCCGCCATCACACGGTGGGCCAGAAATGCTCAAGGCATTGCCGGTTGAAGGAATCGATGCCATTACAGCCTCTGCAGGTGCTCTAGACTGTGTACCTAAGAAACCATGTTAA 1317 45.18 MGSIKLREFVLIACLTALIPTLYALTTPDDKYWHDRMLAAREATNKAAHPNPLKQTHHFNLHAHRRMQGMNLTHIARNLRSTGSCVASNPIDKCWRCDPDWEANRKKLASCVMGFGRGTTGGAAGEIYVVTDPSDNDLMDPKPGTLRYGCLQEKPLWIIFKQDMNIKLRGELMLTPDKTIDGRGAKVHIANGGSFNIFLTKNIIIHGLHIHNIVGLPGGRTIRDSPEHKGTRGPSDGDAIGIFGSSHVWIDHVSFSTCEDGLVDAINGSTAITISNSHFTKHDHVILLGASDSNVDDAKMQVTVAYNHFDKGLVQRMPRGRSGFFHVVNNDYTEWEMYAIGGTHNPTIMSQGNRFYAPNNPNAKQVTSQNKGCPQSEWKNWKWSTEGDLLLNGAIFFQSGGSPPSHGGPEMLKALPVEGIDAITASAGALDCVPKKPC 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 945453 946854 + Conep02aG0018600.1 Cone2ag0181 432648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 111 128 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 135 160 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 171 187 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Cone2ag0181 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Cone2ag0181 438 Pfam Pectate lyase, N terminus 30 73 IPR007524 GO:0030570(InterPro)
Cone2ag0181 438 Gene3D - 88 431 IPR012334 -
Cone2ag0181 438 Pfam Pectate lyase 172 355 IPR002022 -
Cone2ag0181 438 SMART amb_all 163 361 IPR002022 -
Cone2ag0181 438 SUPERFAMILY Pectin lyase-like 83 405 IPR011050 -
Cone2ag0181 438 PANTHER PECTATE LYASE 18-RELATED 19 434 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0863 Cone-Chr16:9159768 Cone2ag0181 Cone-Chr2:945453 3.61E-301 dispersed
Cone16ag0864 Cone-Chr16:9167743 Cone2ag0181 Cone-Chr2:945453 1.20E-57 dispersed
Cone16ag0865 Cone-Chr16:9168090 Cone2ag0181 Cone-Chr2:945453 2.14E-61 dispersed
Cone16ag0866 Cone-Chr16:9168457 Cone2ag0181 Cone-Chr2:945453 6.49E-47 dispersed
Cone16ag0871 Cone-Chr16:9182839 Cone2ag0181 Cone-Chr2:945453 4.71E-129 dispersed
Cone16ag0872 Cone-Chr16:9183557 Cone2ag0181 Cone-Chr2:945453 2.65E-32 dispersed
Cone17ag1110 Cone-Chr17:8246004 Cone2ag0181 Cone-Chr2:945453 6.96E-245 dispersed
Cone2ag0181 Cone-Chr2:945453 Cone2ag0944 Cone-Chr2:35120894 1.08E-146 dispersed
Cone11ag0149 Cone-Chr11:699753 Cone2ag0181 Cone-Chr2:945453 1.65E-163 wgd
Cone16ag0862 Cone-Chr16:9144206 Cone2ag0181 Cone-Chr2:945453 1.27E-279 wgd
Cone18ag1333 Cone-Chr18:9223112 Cone2ag0181 Cone-Chr2:945453 5.23E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0181 K01728 - gmx:100801864 483.026