Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0185 ATGGCCTTCCCACCCCCTCATAGCTTCATGTTCCATTCTAGTAGTCTTCCTGATCATCAAGACCAGGCCCCGCCCCACCATTTCCATGGCCGTCGCTTACCTTTTGCGATGAAGAGATCGACATCATTTTCGGGAGTTGAGCATCAAAACAATTTCGACGAAGTATATGGAGATGACGGGCTGTCGGACGACGGATCGCAACTTGGGGAGAAGAAGAAAAGGCTGAATATAGAGCAAGTGAAGGCTCTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCTGAGAGGAAAGTGCAGTTGGCTAAGGCCTTAGGTATGCAGCCGAGACAGATTGCCATTTGGTTTCAAAACCGAAGAGCTCGTTGGAAAACCAAGCAGTTACAGAAAGACTACGAGGTTTTCAAGAAACAGTTTGATGCACTTAAGGCTGATAATGATGCCCTTCAAGCTCAACATACCAAACTTAATGCTGAGTTAATGGCTCTGAAAAGTAGAGATTCAAGCAATGCAAGCACTGAGAACAGTTCAGATGTGAACTTAGGTATCTCAAGAACTCCATTAATGAGCAGTCCCGTATCTTCTCAACTAAGCGGAAAAAATCTGTTTCCGATGAGCCATCAACCTCATCAGGACACATCAAGTTCAGACGGCCTGCATTGTCTCAAGATTAATGATGATCATGATCACCATCAAGTTCTTCAACAAGATCATGAACACAGCTTCAACATCATGTTCAATAGCATAGATGATCAACAAGCTGGGTTTTGGCCATGGCCTGATCATCATCAGCAGCAGCAGCAGCAAAACAACTTCCACTGCGCAAATAATCGATTAATATTCATTGATTAA 852 43.9 MAFPPPHSFMFHSSSLPDHQDQAPPHHFHGRRLPFAMKRSTSFSGVEHQNNFDEVYGDDGLSDDGSQLGEKKKRLNIEQVKALEKSFELGNKLEPERKVQLAKALGMQPRQIAIWFQNRRARWKTKQLQKDYEVFKKQFDALKADNDALQAQHTKLNAELMALKSRDSSNASTENSSDVNLGISRTPLMSSPVSSQLSGKNLFPMSHQPHQDTSSSDGLHCLKINDDHDHHQVLQQDHEHSFNIMFNSIDDQQAGFWPWPDHHQQQQQQNNFHCANNRLIFID 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 961623 963283 - Conep02aG0019000.1 Cone2ag0185 432652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0185 283 Pfam Homeobox associated leucine zipper 126 166 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0185 283 Coils Coil 125 166 - -
Cone2ag0185 283 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677(InterPro)
Cone2ag0185 283 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677(InterPro)
Cone2ag0185 283 SUPERFAMILY Homeodomain-like 61 128 IPR009057 -
Cone2ag0185 283 Pfam Homeodomain 71 124 IPR001356 GO:0003677(InterPro)
Cone2ag0185 283 SMART HOX_1 69 130 IPR001356 GO:0003677(InterPro)
Cone2ag0185 283 Gene3D - 63 132 - -
Cone2ag0185 283 FunFam Homeobox-leucine zipper protein ATHB-13 63 130 - -
Cone2ag0185 283 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677(InterPro)
Cone2ag0185 283 MobiDBLite consensus disorder prediction 165 185 - -
Cone2ag0185 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 251 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone2ag0185 283 MobiDBLite consensus disorder prediction 1 30 - -
Cone2ag0185 283 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone2ag0185 283 CDD homeodomain 71 127 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0185 Cone-Chr2:961623 Cone9ag0617 Cone-Chr9:2933324 4.83E-25 dispersed
Cone13ag0969 Cone-Chr13:8272664 Cone2ag0185 Cone-Chr2:961623 9.19E-46 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone2ag0185 Cone-Chr2:961623 3.20E-149 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone2ag0185 Cone-Chr2:961623 8.93E-44 wgd
Cone19ag0090 Cone-Chr19:519877 Cone2ag0185 Cone-Chr2:961623 7.10E-26 wgd
Cone2ag0185 Cone-Chr2:961623 Cone6ag0604 Cone-Chr6:2966504 2.77E-46 wgd
Cone2ag0185 Cone-Chr2:961623 Cone9ag0609 Cone-Chr9:2879326 2.77E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45685 PF13424 TPR_12 1.20E-11 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0185 K09338 - cit:102608732 291.582