Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0187 ATGGCGGAACCTATTGATCCAGCATCTAAGACGACGACTGCGGCAGCAGCAGCAGCATTACCACCAGAGGCAGAGAAGAAGAAGGAACAGAGCTTACCCTTCTACCAGCTCTTCTCTTTTGCTGATATGTATGACTATTTCTTAATGACTCTTGGAAGCATAGGAGCTATCATACATGGCTCCTCCATGCCCGTCTTCTTCCTCTTGTTTGGTCAAATGGTCAATGGGTTTGGAAAGAACCAATCTGATGTCAAGAAAATGACTGATGAAGTCTGCAAGTATGCTTTATATTTTGTGTATCTTGGACTTATTGTGTGCTTCTCATCCTATGCGGAGATTGCATGCTGGATGTATAGTGGGGAAAGGCAAGTGAGTACATTGAGGAAGAAGTATTTGGAGGCAGTTTTGAAACAAGACGTTGGCTTCTTTGACACTGATGCTAGAACTGGTGATGTTGTTTTCAGTGTCTCTACAGACACTCTTCTTGTCCAAGATGCCATTAGCGAGAAGGTGGGCAATTTCATTCATTATCTATCAACGTTTCTGGCTGGATTAGTGGTTGGCTTTGTATCAGCATGGAGATTAGCACTGTTAAGTGTAGCAGTAATTCCTGGCATTGCTTTTGCCGGTGGATTATATGCTTATACTCTTACTGGCCTTACTTCCAAGAGCCGAGAATCTTATGCCAATGCGGGTGTTATTGCCGAGCAGGCCATTGCTCAAGTCCGGACAGTTTACTCCTACGTAGGAGAGAGCAAGGCTCTAAATTCATACTCCGATGCAATACAGAACACATTGAAACTGGGATACAAGGCTGGAATAGCTAAAGGCTTAGGCTTGGGATGTACTTATGGAATTGCTTGTATGTCATGGGCCCTAGTTTTCTGGTATGCTGGTGTCTTTATCCGAAACGGCCAAACCGATGGTGGCAAAGCCTTCACCGCCATTTTCTCCGCCATTGTGGGTGGCATGAGTTTGGGGCAGTCATTTTCAAATCTAGGAGCGTTTAGCAAAGGTAAAGCGGCCGGATATAAGTTGATGGAGATCATTAACCAGAAACCGACTATAATTCAAGACCCTTTAGATGGAAAATGCTTGTCTGAAGTTAACGGGAATATAGAGTTAAAGAATGTAACTTTCAGTTACCCATCAAGGCCTGATGTGATAATTTTCCGAGATTTTTCGATTTTCTTTCCGGCCGGAAAGACAGTAGCAGTTGTGGGTGGAAGTGGGTCCGGAAAAAGCACTGTTGTTTCTTTGATTGAACGGTTCTATGATCCTAATCAAGGGGAAATCTTGATTGATAATGTGGATATAAAGACACTCCAATTGAAATGGTTAAGAGATCAAGTCGGATTGGTGAATCAAGAGCCGGCTTTATTTGCAACAACAATACTTGAAAACATTCTATATGGAAAACCAGATGCAACAATGGCTGAAGTAGAAGCTGCTTCTTCAGCAGCAAATGCTCATAGTTTCATTGCATTACTTCCAAATGGCTATAACACTCAGGTTGGAGAGAGAGGAGTCCAACTATCTGGTGGGCAAAAGCAAAGGATAGCAATAGCTAGAGCAATGCTAAAAGACCCGAAAATCCTCCTCCTTGATGAAGCAACTAGTGCACTTGACGCAGGGTCGGAGAGCATCGTTCAAGAAGCTCTAGACCGTCTGATGATCGGAAGAACAACAGTCATGATTGCACATCGCCTCTCCACCATAAGAAACGTGGACTCTATCGCCGTAATACAACAGGGGCAAGTCGTAGAGACCGGATCTCATGATGAACTCATTGCCAAAGCAGGGGCATATGCAACTTTGATCCGGTTCCAAGAAATGGTCAGGAATAAGGACTTTTCCATGAACCCATCTACCCGTAGAACACGTTCGTCTCGTTTAAGCCACTCTCTGTCGACTAAGTCGTTGAGTCTTAGATCAGGTAGTTTACGGAATCTAAGCTATTCATATAGCACTGGGGCAGATGGAAGGATCGAGATGGTCTCAAATGCTGAGACTGACCGGAAAAATCCGGCCCCAAATGGATATTTTTTCCGGTTACTTAAACTTAATGCACCCGAATGGCCTTATTCTATCATGGGTGCTATAGGGTCGGTTCTTTCGGGTTTTATCGGTCCCACATTTGCCATTGTTATGAGTAACATGATCGAGGTTTTCTACTACAGAAACCCAGCTTCTATGGAGAGAAAGACAAAGGAGTATGTGTTCATATATATCGGAGCTGGACTTTATGCCGTGTTCGCATATTTGATCCAGCATTACTTCTTTACAATCATGGGAGAAAACCTTACTACAAGAGTTAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAGGTTGGATGGTTTGATGAAGAGGAGCATAACTCGAGCCTTGTGGCGGCCCGGTTAGCCACGGACGCGGCCGATGTGAAATCTGCTATGGCCGAGCGGATTTCGGTCATCTTGCAGAACATGACATCACTGCTGACCTCATTCATAGTTGCTTTCATTGTGGAATGGAGGGTCTCTCTTCTGATCTTGGGAACCTTCCCTCTTCTAGTCCTCGCCAATTTTGCTCAACAACTTTCACTTAAAGGATTTGCCGGAGACACCGCCGAAGCCCATGCGAAGACAAGCATGATAGCCGGAGAGGGAGTGAGCAATATACGAACGGTTGCAGCCTTTAATGCACAAGACAAGATTCTCTCTCTATTCTCCCACGAGCTCCGGGTCCCACAGGCCCACAGCCTTCGTAGAAGTCAAACCGCAGGCCTACTGTTCGGTCTCTCTCAGCTCGCTCTCTATGCCTCGGAAGCTCTCATCTTGTGGTACGGGGTCCACCTTGTTAGCAAAGGCCACTCCACCTTCTCAAAGGTCATTAAAGTCTTTGTCGTATTGGTTGTAACAGCTAATTCGGTTGCAGAAACGGTTAGCCTAGCTCCGGAAATCATCCGGGGCGGTGAAGCAGTCGGCTCGGTCTTCTCGATCCTTGATCGATCCACTAGGATTGACTCGGATGATCCCGAGGCAGAACCGGTCGAATCGCTTCGAGGGGAGATTGAGCTTCGACATGTCGACTTTGCATACCCGGCCCGGCCCGATATCATGGTGTTTAAGGATCTTAGTTTGAGGATCCGAGCGGGCCAGAGCCAGGCTCTTGTGGGGGCGAGCGGGTCCGGGAAGAGTTCTGTGATTGCGTTGATTGAGAGGTTCTACGATCCAATTGTTGGGAAAGTCATGATCGATGGAAAGGACATTAGGCGATATAACTTGAAGTCTTTAAGGCTCAAAATGGGGCTTGTACAACAAGAGCCGGCTCTTTTCGCCTCAAGCATTTTTGATAACATTGCATATGGGAAAGAAGGGGCCACAGAGACCGAAGTGATAGAAGCGGCTCGAGCCGCCAACGTTCATGGGTTTGTTAGCGGTTTGCCCAACGGCTACAAGACCCCAGTTGGGGAGAGAGGGGTTCAACTTTCAGGTGGACAAAAACAACGGATTGCAATTGCTCGAGCCGTTCTCAAGGACCCGGCTATTCTTCTCCTAGATGAGGCTACAAGTGCACTTGATGCGGAATCGGAGTGTATGTTGCAAGAAGCACTAGAGCGGCTCATGAGGGGTCGAACCACCGTGCTTGTCGCTCATTGGTTATCAACAATTCGAGGGGTAGATTGTATTGGGGTGGTGCAAGATGGTCGCATAGTCGAACAAGGTAGCCATTCTGACCTTATAAGCCGGCCTGATGGTGCTTATTCTCGACTCTTGCAGTTACAAAACCATCACATATGA 3786 46.43 MAEPIDPASKTTTAAAAAALPPEAEKKKEQSLPFYQLFSFADMYDYFLMTLGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQSDVKKMTDEVCKYALYFVYLGLIVCFSSYAEIACWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGIAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIIQDPLDGKCLSEVNGNIELKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGEILIDNVDIKTLQLKWLRDQVGLVNQEPALFATTILENILYGKPDATMAEVEAASSAANAHSFIALLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVMIAHRLSTIRNVDSIAVIQQGQVVETGSHDELIAKAGAYATLIRFQEMVRNKDFSMNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPNGYFFRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVFAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAMAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAEAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFSHELRVPQAHSLRRSQTAGLLFGLSQLALYASEALILWYGVHLVSKGHSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDSDDPEAEPVESLRGEIELRHVDFAYPARPDIMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRYNLKSLRLKMGLVQQEPALFASSIFDNIAYGKEGATETEVIEAARAANVHGFVSGLPNGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECMLQEALERLMRGRTTVLVAHWLSTIRGVDCIGVVQDGRIVEQGSHSDLISRPDGAYSRLLQLQNHHI 1261
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 985768 992927 - Conep02aG0019200.1 Cone2ag0187 432654
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0187 1261 Gene3D - 1009 1261 IPR027417 -
Cone2ag0187 1261 Pfam ABC transporter 1038 1186 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 610 IPR027417 -
Cone2ag0187 1261 PANTHER ABC TRANSPORTER B FAMILY 15 631 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone2ag0187 1261 FunFam ABC transporter B family member 1 36 372 - -
Cone2ag0187 1261 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 FunFam ABC transporter B family member 19 363 611 - -
Cone2ag0187 1261 SUPERFAMILY ABC transporter transmembrane region 684 998 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone2ag0187 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1257 IPR027417 -
Cone2ag0187 1261 CDD ABC_MTABC3_MDL1_MDL2 373 610 - -
Cone2ag0187 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 338 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone2ag0187 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 1002 - -
Cone2ag0187 1261 Pfam ABC transporter transmembrane region 697 967 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone2ag0187 1261 Pfam ABC transporter transmembrane region 51 322 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone2ag0187 1261 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 CDD ABC_MTABC3_MDL1_MDL2 1019 1257 - -
Cone2ag0187 1261 Gene3D ABC transporter type 1, transmembrane domain 96 993 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone2ag0187 1261 SMART AAA_5 400 586 IPR003593 GO:0016887(InterPro)
Cone2ag0187 1261 SMART AAA_5 1046 1232 IPR003593 GO:0016887(InterPro)
Cone2ag0187 1261 Gene3D - 371 631 IPR027417 -
Cone2ag0187 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Cone2ag0187 1261 MobiDBLite consensus disorder prediction 619 638 - -
Cone2ag0187 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 Pfam ABC transporter 393 540 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1021 1255 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone2ag0187 1261 FunFam ABC transporter B family member 1 676 985 - -
Cone2ag0187 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 984 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone2ag0187 1261 SUPERFAMILY ABC transporter transmembrane region 37 359 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone2ag0187 1261 FunFam ABC transporter B family member 19 1009 1258 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0047 Cone-Chr17:286802 Cone2ag0187 Cone-Chr2:985768 1.02E-79 dispersed
Cone19ag1238 Cone-Chr19:8534464 Cone2ag0187 Cone-Chr2:985768 0 dispersed
Cone1ag1048 Cone-Chr1:55218792 Cone2ag0187 Cone-Chr2:985768 2.92e-312 dispersed
Cone20ag1355 Cone-Chr20:8695961 Cone2ag0187 Cone-Chr2:985768 0 dispersed
Cone2ag0163 Cone-Chr2:854724 Cone2ag0187 Cone-Chr2:985768 0 dispersed
Cone2ag0187 Cone-Chr2:985768 Cone8ag0595 Cone-Chr8:5053599 0 dispersed
Cone16ag0856 Cone-Chr16:9101076 Cone2ag0187 Cone-Chr2:985768 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0187 K05658 - cit:102607167 2158.26