Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone2ag0187 | ATGGCGGAACCTATTGATCCAGCATCTAAGACGACGACTGCGGCAGCAGCAGCAGCATTACCACCAGAGGCAGAGAAGAAGAAGGAACAGAGCTTACCCTTCTACCAGCTCTTCTCTTTTGCTGATATGTATGACTATTTCTTAATGACTCTTGGAAGCATAGGAGCTATCATACATGGCTCCTCCATGCCCGTCTTCTTCCTCTTGTTTGGTCAAATGGTCAATGGGTTTGGAAAGAACCAATCTGATGTCAAGAAAATGACTGATGAAGTCTGCAAGTATGCTTTATATTTTGTGTATCTTGGACTTATTGTGTGCTTCTCATCCTATGCGGAGATTGCATGCTGGATGTATAGTGGGGAAAGGCAAGTGAGTACATTGAGGAAGAAGTATTTGGAGGCAGTTTTGAAACAAGACGTTGGCTTCTTTGACACTGATGCTAGAACTGGTGATGTTGTTTTCAGTGTCTCTACAGACACTCTTCTTGTCCAAGATGCCATTAGCGAGAAGGTGGGCAATTTCATTCATTATCTATCAACGTTTCTGGCTGGATTAGTGGTTGGCTTTGTATCAGCATGGAGATTAGCACTGTTAAGTGTAGCAGTAATTCCTGGCATTGCTTTTGCCGGTGGATTATATGCTTATACTCTTACTGGCCTTACTTCCAAGAGCCGAGAATCTTATGCCAATGCGGGTGTTATTGCCGAGCAGGCCATTGCTCAAGTCCGGACAGTTTACTCCTACGTAGGAGAGAGCAAGGCTCTAAATTCATACTCCGATGCAATACAGAACACATTGAAACTGGGATACAAGGCTGGAATAGCTAAAGGCTTAGGCTTGGGATGTACTTATGGAATTGCTTGTATGTCATGGGCCCTAGTTTTCTGGTATGCTGGTGTCTTTATCCGAAACGGCCAAACCGATGGTGGCAAAGCCTTCACCGCCATTTTCTCCGCCATTGTGGGTGGCATGAGTTTGGGGCAGTCATTTTCAAATCTAGGAGCGTTTAGCAAAGGTAAAGCGGCCGGATATAAGTTGATGGAGATCATTAACCAGAAACCGACTATAATTCAAGACCCTTTAGATGGAAAATGCTTGTCTGAAGTTAACGGGAATATAGAGTTAAAGAATGTAACTTTCAGTTACCCATCAAGGCCTGATGTGATAATTTTCCGAGATTTTTCGATTTTCTTTCCGGCCGGAAAGACAGTAGCAGTTGTGGGTGGAAGTGGGTCCGGAAAAAGCACTGTTGTTTCTTTGATTGAACGGTTCTATGATCCTAATCAAGGGGAAATCTTGATTGATAATGTGGATATAAAGACACTCCAATTGAAATGGTTAAGAGATCAAGTCGGATTGGTGAATCAAGAGCCGGCTTTATTTGCAACAACAATACTTGAAAACATTCTATATGGAAAACCAGATGCAACAATGGCTGAAGTAGAAGCTGCTTCTTCAGCAGCAAATGCTCATAGTTTCATTGCATTACTTCCAAATGGCTATAACACTCAGGTTGGAGAGAGAGGAGTCCAACTATCTGGTGGGCAAAAGCAAAGGATAGCAATAGCTAGAGCAATGCTAAAAGACCCGAAAATCCTCCTCCTTGATGAAGCAACTAGTGCACTTGACGCAGGGTCGGAGAGCATCGTTCAAGAAGCTCTAGACCGTCTGATGATCGGAAGAACAACAGTCATGATTGCACATCGCCTCTCCACCATAAGAAACGTGGACTCTATCGCCGTAATACAACAGGGGCAAGTCGTAGAGACCGGATCTCATGATGAACTCATTGCCAAAGCAGGGGCATATGCAACTTTGATCCGGTTCCAAGAAATGGTCAGGAATAAGGACTTTTCCATGAACCCATCTACCCGTAGAACACGTTCGTCTCGTTTAAGCCACTCTCTGTCGACTAAGTCGTTGAGTCTTAGATCAGGTAGTTTACGGAATCTAAGCTATTCATATAGCACTGGGGCAGATGGAAGGATCGAGATGGTCTCAAATGCTGAGACTGACCGGAAAAATCCGGCCCCAAATGGATATTTTTTCCGGTTACTTAAACTTAATGCACCCGAATGGCCTTATTCTATCATGGGTGCTATAGGGTCGGTTCTTTCGGGTTTTATCGGTCCCACATTTGCCATTGTTATGAGTAACATGATCGAGGTTTTCTACTACAGAAACCCAGCTTCTATGGAGAGAAAGACAAAGGAGTATGTGTTCATATATATCGGAGCTGGACTTTATGCCGTGTTCGCATATTTGATCCAGCATTACTTCTTTACAATCATGGGAGAAAACCTTACTACAAGAGTTAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAGGTTGGATGGTTTGATGAAGAGGAGCATAACTCGAGCCTTGTGGCGGCCCGGTTAGCCACGGACGCGGCCGATGTGAAATCTGCTATGGCCGAGCGGATTTCGGTCATCTTGCAGAACATGACATCACTGCTGACCTCATTCATAGTTGCTTTCATTGTGGAATGGAGGGTCTCTCTTCTGATCTTGGGAACCTTCCCTCTTCTAGTCCTCGCCAATTTTGCTCAACAACTTTCACTTAAAGGATTTGCCGGAGACACCGCCGAAGCCCATGCGAAGACAAGCATGATAGCCGGAGAGGGAGTGAGCAATATACGAACGGTTGCAGCCTTTAATGCACAAGACAAGATTCTCTCTCTATTCTCCCACGAGCTCCGGGTCCCACAGGCCCACAGCCTTCGTAGAAGTCAAACCGCAGGCCTACTGTTCGGTCTCTCTCAGCTCGCTCTCTATGCCTCGGAAGCTCTCATCTTGTGGTACGGGGTCCACCTTGTTAGCAAAGGCCACTCCACCTTCTCAAAGGTCATTAAAGTCTTTGTCGTATTGGTTGTAACAGCTAATTCGGTTGCAGAAACGGTTAGCCTAGCTCCGGAAATCATCCGGGGCGGTGAAGCAGTCGGCTCGGTCTTCTCGATCCTTGATCGATCCACTAGGATTGACTCGGATGATCCCGAGGCAGAACCGGTCGAATCGCTTCGAGGGGAGATTGAGCTTCGACATGTCGACTTTGCATACCCGGCCCGGCCCGATATCATGGTGTTTAAGGATCTTAGTTTGAGGATCCGAGCGGGCCAGAGCCAGGCTCTTGTGGGGGCGAGCGGGTCCGGGAAGAGTTCTGTGATTGCGTTGATTGAGAGGTTCTACGATCCAATTGTTGGGAAAGTCATGATCGATGGAAAGGACATTAGGCGATATAACTTGAAGTCTTTAAGGCTCAAAATGGGGCTTGTACAACAAGAGCCGGCTCTTTTCGCCTCAAGCATTTTTGATAACATTGCATATGGGAAAGAAGGGGCCACAGAGACCGAAGTGATAGAAGCGGCTCGAGCCGCCAACGTTCATGGGTTTGTTAGCGGTTTGCCCAACGGCTACAAGACCCCAGTTGGGGAGAGAGGGGTTCAACTTTCAGGTGGACAAAAACAACGGATTGCAATTGCTCGAGCCGTTCTCAAGGACCCGGCTATTCTTCTCCTAGATGAGGCTACAAGTGCACTTGATGCGGAATCGGAGTGTATGTTGCAAGAAGCACTAGAGCGGCTCATGAGGGGTCGAACCACCGTGCTTGTCGCTCATTGGTTATCAACAATTCGAGGGGTAGATTGTATTGGGGTGGTGCAAGATGGTCGCATAGTCGAACAAGGTAGCCATTCTGACCTTATAAGCCGGCCTGATGGTGCTTATTCTCGACTCTTGCAGTTACAAAACCATCACATATGA | 3786 | 46.43 | MAEPIDPASKTTTAAAAAALPPEAEKKKEQSLPFYQLFSFADMYDYFLMTLGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQSDVKKMTDEVCKYALYFVYLGLIVCFSSYAEIACWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGIAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIIQDPLDGKCLSEVNGNIELKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGEILIDNVDIKTLQLKWLRDQVGLVNQEPALFATTILENILYGKPDATMAEVEAASSAANAHSFIALLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVMIAHRLSTIRNVDSIAVIQQGQVVETGSHDELIAKAGAYATLIRFQEMVRNKDFSMNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPNGYFFRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVFAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAMAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAEAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFSHELRVPQAHSLRRSQTAGLLFGLSQLALYASEALILWYGVHLVSKGHSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDSDDPEAEPVESLRGEIELRHVDFAYPARPDIMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRYNLKSLRLKMGLVQQEPALFASSIFDNIAYGKEGATETEVIEAARAANVHGFVSGLPNGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECMLQEALERLMRGRTTVLVAHWLSTIRGVDCIGVVQDGRIVEQGSHSDLISRPDGAYSRLLQLQNHHI | 1261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 985768 | 992927 | - | Conep02aG0019200.1 | Cone2ag0187 | 432654 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone2ag0187 | 1261 | Gene3D | - | 1009 | 1261 | IPR027417 | - | |
| Cone2ag0187 | 1261 | Pfam | ABC transporter | 1038 | 1186 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 366 | 610 | IPR027417 | - | |
| Cone2ag0187 | 1261 | PANTHER | ABC TRANSPORTER B FAMILY | 15 | 631 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cone2ag0187 | 1261 | FunFam | ABC transporter B family member 1 | 36 | 372 | - | - | |
| Cone2ag0187 | 1261 | ProSitePatterns | ABC transporters family signature. | 1158 | 1172 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | FunFam | ABC transporter B family member 19 | 363 | 611 | - | - | |
| Cone2ag0187 | 1261 | SUPERFAMILY | ABC transporter transmembrane region | 684 | 998 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0187 | 1261 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1009 | 1257 | IPR027417 | - | |
| Cone2ag0187 | 1261 | CDD | ABC_MTABC3_MDL1_MDL2 | 373 | 610 | - | - | |
| Cone2ag0187 | 1261 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 51 | 338 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone2ag0187 | 1261 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 686 | 1002 | - | - | |
| Cone2ag0187 | 1261 | Pfam | ABC transporter transmembrane region | 697 | 967 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone2ag0187 | 1261 | Pfam | ABC transporter transmembrane region | 51 | 322 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone2ag0187 | 1261 | ProSitePatterns | ABC transporters family signature. | 512 | 526 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | CDD | ABC_MTABC3_MDL1_MDL2 | 1019 | 1257 | - | - | |
| Cone2ag0187 | 1261 | Gene3D | ABC transporter type 1, transmembrane domain | 96 | 993 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0187 | 1261 | SMART | AAA_5 | 400 | 586 | IPR003593 | GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | SMART | AAA_5 | 1046 | 1232 | IPR003593 | GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | Gene3D | - | 371 | 631 | IPR027417 | - | |
| Cone2ag0187 | 1261 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 49 | 346 | - | - | |
| Cone2ag0187 | 1261 | MobiDBLite | consensus disorder prediction | 619 | 638 | - | - | |
| Cone2ag0187 | 1261 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 373 | 609 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | Pfam | ABC transporter | 393 | 540 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1021 | 1255 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone2ag0187 | 1261 | FunFam | ABC transporter B family member 1 | 676 | 985 | - | - | |
| Cone2ag0187 | 1261 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 697 | 984 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone2ag0187 | 1261 | SUPERFAMILY | ABC transporter transmembrane region | 37 | 359 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0187 | 1261 | FunFam | ABC transporter B family member 19 | 1009 | 1258 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0047 | Cone-Chr17:286802 | Cone2ag0187 | Cone-Chr2:985768 | 1.02E-79 | dispersed | |
| Cone19ag1238 | Cone-Chr19:8534464 | Cone2ag0187 | Cone-Chr2:985768 | 0 | dispersed | |
| Cone1ag1048 | Cone-Chr1:55218792 | Cone2ag0187 | Cone-Chr2:985768 | 2.92e-312 | dispersed | |
| Cone20ag1355 | Cone-Chr20:8695961 | Cone2ag0187 | Cone-Chr2:985768 | 0 | dispersed | |
| Cone2ag0163 | Cone-Chr2:854724 | Cone2ag0187 | Cone-Chr2:985768 | 0 | dispersed | |
| Cone2ag0187 | Cone-Chr2:985768 | Cone8ag0595 | Cone-Chr8:5053599 | 0 | dispersed | |
| Cone16ag0856 | Cone-Chr16:9101076 | Cone2ag0187 | Cone-Chr2:985768 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone2ag0187 | K05658 | - | cit:102607167 | 2158.26 |