Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0193 ATGATGATGCAAACCATGGACTTAACTCCAATAGTAACCACTACAAACACAACAAGCGCTACCTCAAAATCGCCCGAACCCGATAGCGGCGGAACACCCACGCGACTGCACACCTCCGCCGCAGCCAAGCCACTAAACTCCACCAACGGCATCCTCAAACTCCACCACCATCCGCTCAACCAACACTTCAGTGGCCTTCCCGACCACCATAACCGCCTTCTAACCGTCGTCACCTACAAAGAATGCCTCAAAAACCACGCCGCCACCTTAGGAACCCACGCGCTCGACGGCTGTGGAGAATTCATGCCATCTCCCACCTCTACGTCAGCCGATCCTACCTCGCTAAAATGTGCCGCCTGTGGCTGCCACCGTAACTTTCATCGCAAAGATCCAGAAGAACCCATCTCCCCCACCGCCGCCGCTGCCACCACCCACTTAATCGAATACCAACCCCACCACCGCCACCACCCACTTGCTCCACCAGCACCTTCGCGGCTAATTCCACTCGCCAACCGGAGCCCAAACTCCTCTCCGCCGCCGATCTCCTCCTCTTACTACCCCTCAGCTCCCCACATGCTCTTAGCTCTCTCCTCCGGTTTATCCGGTCCCCAAGAAAACTCTACAACTCATTCAAGGAAGAGATTCAGGACTAAGTTCAGTCAAGAACAGAAGCTCAAGATGTACCATTTAGCAGAGAGAGTCGGCTGGAAGATGCAGAGAAGAGACGATGAGCTGATTCAGGATTTCTGTAACGAAATCGGAATCGATAGAGGAGTGCTCAAGGTGTGGTTGCATAATAATAAGAACTCGTTGGGAAGGAAGGCGATTAATATTAATGACAGTAACAGTGATATTAATATCAATGGCGGTGCTAGGGCTCATGAGGAGATCATTGGACATGATAACAGAGTTCAGAATGATGATGAGGAAGAAGATGATGATCATGAAGATGACAATGACCATATGGGTAGAGATGAAGACAATGAACATGCCGGCGTTAATGGCGGTTCTTCTTAG 1017 50.93 MMMQTMDLTPIVTTTNTTSATSKSPEPDSGGTPTRLHTSAAAKPLNSTNGILKLHHHPLNQHFSGLPDHHNRLLTVVTYKECLKNHAATLGTHALDGCGEFMPSPTSTSADPTSLKCAACGCHRNFHRKDPEEPISPTAAAATTHLIEYQPHHRHHPLAPPAPSRLIPLANRSPNSSPPPISSSYYPSAPHMLLALSSGLSGPQENSTTHSRKRFRTKFSQEQKLKMYHLAERVGWKMQRRDDELIQDFCNEIGIDRGVLKVWLHNNKNSLGRKAININDSNSDININGGARAHEEIIGHDNRVQNDDEEEDDDHEDDNDHMGRDEDNEHAGVNGGSS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1019885 1021279 - Conep02aG0019800.1 Cone2ag0193 432660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0193 338 MobiDBLite consensus disorder prediction 151 184 - -
Cone2ag0193 338 FunFam Zinc-finger homeodomain protein 2 200 273 - -
Cone2ag0193 338 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 270 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cone2ag0193 338 MobiDBLite consensus disorder prediction 297 338 - -
Cone2ag0193 338 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 79 130 IPR006456 -
Cone2ag0193 338 MobiDBLite consensus disorder prediction 1 38 - -
Cone2ag0193 338 Pfam ZF-HD protein dimerisation region 77 131 IPR006456 -
Cone2ag0193 338 NCBIfam homeobox domain, ZF-HD class 212 269 IPR006455 -
Cone2ag0193 338 MobiDBLite consensus disorder prediction 306 320 - -
Cone2ag0193 338 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 78 130 IPR006456 -
Cone2ag0193 338 Gene3D - 197 272 - -
Cone2ag0193 338 SUPERFAMILY Homeodomain-like 202 273 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0193 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0539 Cone-Chr20:2995418 Cone2ag0193 Cone-Chr2:1019885 9.47E-47 dispersed
Cone2ag0193 Cone-Chr2:1019885 Cone6ag0586 Cone-Chr6:2878195 6.56E-51 dispersed
Cone16ag0849 Cone-Chr16:9062314 Cone2ag0193 Cone-Chr2:1019885 3.64E-163 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone4ag0542 Cone-Chr4:2443471 1.68E-79 wgd
Cone2ag0193 Cone-Chr2:1019885 Cone7ag0516 Cone-Chr7:2383591 9.33E-77 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone20ag0539 . 61 253 ZF-HD Transcription Factor Family AT4G24660 61.7 1.9e-57 219.9
Cone17ag1192 . 41 257 ZF-HD Transcription Factor Family AT4G24660 53.0 4.1e-52 202.2
Cone7ag0516 . 20 268 ZF-HD Transcription Factor Family AT5G39760 58.0 1.0e-51 201.4
Cone4ag0542 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.6 5.5e-50 195.7
Cone16ag0849 . 31 282 ZF-HD Transcription Factor Family AT5G39760 57.0 1.4e-45 181.0
Cone17ag1192 . 61 261 ZF-HD Transcription Factor Family AT5G65410 51.7 5.4e-43 172.2
Cone2ag0193 . 77 271 ZF-HD Transcription Factor Family AT1G69600 52.2 2.1e-51 199.9
Cone4ag0542 . 1 266 ZF-HD Transcription Factor Family AT5G15210 51.5 9.0e-51 198.0
Cone7ag0516 . 1 251 ZF-HD Transcription Factor Family AT5G15210 52.8 2.6e-50 196.4
Cone4ag0542 . 22 268 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.7
Cone7ag0516 . 13 253 ZF-HD Transcription Factor Family AT3G28920 61.8 7.9e-59 224.9
Cone16ag0849 . 2 276 ZF-HD Transcription Factor Family AT3G28920 51.9 5.3e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45688 PF00069 Pkinase 2.20E-12 CL0016 Cone TF