Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone2ag0205 | ATGACCTCGACGACAATCAATGGCAACAATGAAGAGCAGGAATCAATCATCGTTCCCTTACTCTCGTCCCGAAGATCAGCTCCCAATTCTTTATCCCAAGTCGCTATTGTTGGCGCCAATGTTTGCCCTATAGAGAGCCTTGACTACGAATTGTTTGAAAATGAGTTCTTCAAGCAGGATTGGAGGAGTAGAGGGAAGCTCCAGATATTCCAGTACATATTTATGAAGTGGCTCTTGTGTTTTCTGATCGGATTGATCGTTAGCCTTGTTGGGTTTTCTAACAATTTAGCTGTTGAGAATATCGCAGGAATCAAGTTCGTCATTACCTCTAACATGATGCTTGAGAACAGGTATCTAATGGCTTTTACTGTATTTGCTTGTTCCAATTTGGGTCTCACTCTCTTTGCATCTCTTATCACCTCATTTATCTCCCCGGCAGCAGCTGGTTCTGGTATTCCGGAAGTAAAAGCCTACTTAAATGGCGTGGATGCTCCTGGAATATTCACACTCCGAACATTGCTCGTTAAGATAATTGGAAGCATATCTGTGGTGTCATCATCTTTGTATGTGGGCAAGGCAGGGCCCATGGTGCATACTGGTGCTTGTATTGCTGCATTGCTAGGTCAAGGTGGGTCGAAGAAGTACGGTTTGACGTGGAGATGGTTACAGTATTTTAAAAATGATAGGGATCGGAGGGATCTTATAACATGTGGAGCGGCTGCTGGGATTGCTGCCGCTTTTCGGTCTCCGGTCGGTGGTGTATTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAGGTGCTCTTCTCTGGCGAGCCTTCTTCTGCACCGCTATTGTGGCACTTATACTACGATGCCTCATCGATATATGTTTACAGGGAGAATGTGGATTGTTTGGTACTGGCGGGCTTATAATGTTCGATGTCTACTCCAAAACTGTTTCATATTACCTTTCTGACATCCCTCCTGTGCTCGCCCTTGGAATCATAGGAGGCATTTTTGGAAGCTTATACAATTTTCTTCTCGATAAAGTCCTCCGTTTATACAGTCTCATAAATGAGAAAGGAATTGCTTACAAGATCATCCTAGCATGTTCAATCTCGATCTTCACATCCTGCCTACTTTTCGGATTACCGTGGCTCGCGACATGCCAAGCATGCCCTTCTGACGCGACCGAACCCTGTCCCACAGTTGGCCGGTCTGGCAACTACAAGAAGTTCCAATGCCAGTCTGGTTACTACAATGATCTTGCCAGTCTAATCTTCAACACAAACGACGACGCGATCCGGAATCTCTTTAGCAAGAACACGGATTCTGAATTCCAATACTCCTCAATGGCCATATTCTTCTTCGTTTGCTTCTTCTTAAGCATCATCAGTTACGGAATTGTTGCCCCAGCCGGTCTCTTCATCCCAATCATATTAACCGGAGCTTCTTATGGACGTTTTGTTGGGATGTTAGTCGGTTCGAATTCAAACCTCAACCATGGCCTATTTGCTGTTCTGGGGGCCGCTTCATTCCTTGGTGGGTCCATGAGAATGACGGTTTCGCTTTGCGTCATTATTCTCGAACTAACCAATAACCTCTTACTCCTTCCCCTTATAATGCTTGTCCTCCTCATCTCGAAAACCGTAGCAGATGCTTTTAACGGAAACATTTATGATCTTATCATGAAAGCCAAGGGATTTCCTTACCTCGTAACACATGCAGAGCCGTATATGCGACAATTGACCGTAAGTGATGTCGTCATGGGCCCACTTCAAATGTTTCAAGGGATCGAGAAGGTTAGTAATATTGTGCATGTGCTTACAATGACACGGCATAACGGCTTCCCGGTTGTTGACGAGCCGCCTTTTTCTGAGACCTCGGTATTGTTCGGGATCATACTTCGAGCTCATTTGATAACATTGTTGAAGAAGAAGGCGTTCTTGTCGACTCCGGTTCCAACTGGAGTCGATGCATTCACGCAAATTTCGGCAGTTGATTTTGCGAAGAAGGGGTCGGGTAATGTTGATAGGATAGAAGACGTGGAACTGACCGAGGAAGAGATGGAAATGTTCGTAGATCTACATCCATTTACTAATGCCTCGCCTTATACTGTTGTGGAGACTATGTCACTTGCTAAGGCTCTCATACTTTTCCGAGAAGTTGGGCTAAGGCATCTTCTTGTGATCCCTAAAATATCGGGTAGATCTCCCGTAGCGGGTATATTGACACGGCATGATTTTATTTCGGAGCATATACTGAGCTTGCACCCATTGCTCGTAAGAAGCCGTTGGAAAAGGCTACAGATTCGATTTAATCCTCTACAGAAGATCTTCTAA | 2325 | 44.9 | MTSTTINGNNEEQESIIVPLLSSRRSAPNSLSQVAIVGANVCPIESLDYELFENEFFKQDWRSRGKLQIFQYIFMKWLLCFLIGLIVSLVGFSNNLAVENIAGIKFVITSNMMLENRYLMAFTVFACSNLGLTLFASLITSFISPAAAGSGIPEVKAYLNGVDAPGIFTLRTLLVKIIGSISVVSSSLYVGKAGPMVHTGACIAALLGQGGSKKYGLTWRWLQYFKNDRDRRDLITCGAAAGIAAAFRSPVGGVLFALEEMASWWRGALLWRAFFCTAIVALILRCLIDICLQGECGLFGTGGLIMFDVYSKTVSYYLSDIPPVLALGIIGGIFGSLYNFLLDKVLRLYSLINEKGIAYKIILACSISIFTSCLLFGLPWLATCQACPSDATEPCPTVGRSGNYKKFQCQSGYYNDLASLIFNTNDDAIRNLFSKNTDSEFQYSSMAIFFFVCFFLSIISYGIVAPAGLFIPIILTGASYGRFVGMLVGSNSNLNHGLFAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPLIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLVTHAEPYMRQLTVSDVVMGPLQMFQGIEKVSNIVHVLTMTRHNGFPVVDEPPFSETSVLFGIILRAHLITLLKKKAFLSTPVPTGVDAFTQISAVDFAKKGSGNVDRIEDVELTEEEMEMFVDLHPFTNASPYTVVETMSLAKALILFREVGLRHLLVIPKISGRSPVAGILTRHDFISEHILSLHPLLVRSRWKRLQIRFNPLQKIF | 774 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1082670 | 1086985 | + | Conep02aG0021000.1 | Cone2ag0205 | 432672 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone2ag0205 | 774 | Pfam | CBS domain | 697 | 745 | IPR000644 | - | |
| Cone2ag0205 | 774 | PRINTS | Plant CLC chloride channel signature | 293 | 300 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Plant CLC chloride channel signature | 417 | 433 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Plant CLC chloride channel signature | 275 | 285 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Plant CLC chloride channel signature | 50 | 58 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Plant CLC chloride channel signature | 261 | 269 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone2ag0205 | 774 | SMART | cbs_1 | 697 | 748 | IPR000644 | - | |
| Cone2ag0205 | 774 | SMART | cbs_1 | 586 | 639 | IPR000644 | - | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 515 | 534 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 497 | 513 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 176 | 195 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 145 | 162 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 240 | 259 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 465 | 485 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | PRINTS | Chloride channel signature | 553 | 567 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | SUPERFAMILY | CBS-domain pair | 569 | 745 | IPR046342 | - | |
| Cone2ag0205 | 774 | Gene3D | - | 567 | 731 | IPR046342 | - | |
| Cone2ag0205 | 774 | SUPERFAMILY | Clc chloride channel | 54 | 566 | IPR014743 | - | |
| Cone2ag0205 | 774 | Pfam | Voltage gated chloride channel | 133 | 547 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone2ag0205 | 774 | Gene3D | Clc chloride channel | 68 | 566 | - | - | |
| Cone2ag0205 | 774 | ProSiteProfiles | CBS domain profile. | 693 | 754 | IPR000644 | - | |
| Cone2ag0205 | 774 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 29 | 747 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone2ag0205 | 774 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 569 | 746 | - | - | |
| Cone2ag0205 | 774 | FunFam | Chloride channel ClC3 | 68 | 390 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone2ag0205 | Cone-Chr2:1082670 | Cone8ag0780 | Cone-Chr8:7787359 | 0 | dispersed | |
| Cone16ag0837 | Cone-Chr16:9007941 | Cone2ag0205 | Cone-Chr2:1082670 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone2ag0205 | K05016 | - | rcu:8263865 | 1213.75 |