Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0303 ATGGGAGAAGAAGAAGAGCAGGCTGATTTTCCTCTGAAGAAAGACGAAGATAACAGCGTATCACCTAGTAGTTCAACGTTGTCTGATATTCCTACCAAGAAGCTCGCTAGGCAGCTGGATTTCACGGGAGAAGTGCCGGCAAATGAAGCATTGCCATATAAACCTCCGTTTCAGTCGAAGTCGCAGCCAGAGATAGCAGTCATACCGGTGGTGCCTCTGGTATCTAATTCTTCAGTGAAGATCGTAAAACCAGACTCGCCAAAGTCAAGACCAAGACTGAATATTGATACAAAAGATGCTACTCCAAAGAAGCAAAAACAGTGTAATTGTAAACACTCGCGCTGCTTAAAGTTGTACTGTGAGTGTTTCGCATCAGGAATATATTGCGATGGTTGTAACTGTGTAAATTGTTATAACAATGTCGAAAAGGAAGCTGACAGACGAGAAGCTGTAGAAGCTACTTTAGAGCGCAATCCAAATGCGTTTCGACCTAAAATTGCGAGCAGTCCACATGGAAAGCGGGAAATCAGGGAGGATGTCGGGGAGGTCCTTCTGTTGGCAAAGCACAACAAAGGATGTCATTGCAAGAAATCAGGGTGCCTGAAAAAGTACTGTGAGTGCTTCCAAGCCAACATTTTATGCTCTGAAAACTGTAAATGTGTGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTATATTCCATGGAGAAAATGGGAACAACATGGCACATATTCAGCAGGCAGCAAATGCTGCCGTGACTGGAGCTATTGGGTCCTCTGGCTATGCATCCCCGCCCGTATCCAAGAGAAGGAAAGGTCAGGAGCTCTTCTCTGGGACCACTGCTAAGGATCCATCCAGTCATAGGCTTGTACAATTTCAACAGGCTAACCATATCAAAGCTTCCGCGCCTTTGTCTTCCGCCCCAGTTGCTCGCAACGGTGACAATGGAGCTCCAGGTCATGCAAAGTTTACATACAGGTCTTTATTGGCCGACATCATCCAACCACGGGACCTAAAGGAAGTTTGCTCAGTTTTAGTGGTCTTATCCAGTGAAGTTGCCAAGAAGTTAGCAGACCAAAAGAATGCTAAGGAGGAGCAAGGAAAAAATCGAACAGAAACTTCCCTTGCTTCACCCATTGAAGACAAGTTGCAGAGACAAAAGATATCTCATGAGGAAGTTGCAGTCAAGGGTGATTGTTCATCAAGTGCAAACCAGGATGGTAAAATCAGCCCTAATGATTCCACTTCTGATGGCCTAGATGAGCCCAAAGAAAGGCCCATGTCTCCTGGAACATTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCGTGCCAACTTCTTCCTCAAATGGATTATTGAGCACATCGTCACATTCTCCTTCCGGGCAAGAGTTGACTGAAGTCCATGCAGAGCAGGAACTGATAGTCTTGACAAAGTTTCGAGAATGTCTTCATAAGCTCATCACTCTTGGAGAGATAAAAGAAAAGTGGTCATTTCGAGCTAGAAATGAAGAAGGGAATCAGACAACTGCAAGAACAGAGACCGAGGGTCAACCAGGACCCATCAGCAACGGCCTTGCAAAAGCAGCTATTCCACCTATGCCCAAGGATCCTCGGCTTAAGAATCCAATTCTTCCTGAAAATGGGAATAATAAACTAATGGCTTCTTTCGAGGTAAAAAAGTCTTAG 1698 44.94 MGEEEEQADFPLKKDEDNSVSPSSSTLSDIPTKKLARQLDFTGEVPANEALPYKPPFQSKSQPEIAVIPVVPLVSNSSVKIVKPDSPKSRPRLNIDTKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCYNNVEKEADRREAVEATLERNPNAFRPKIASSPHGKREIREDVGEVLLLAKHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNFEGSEERQAIFHGENGNNMAHIQQAANAAVTGAIGSSGYASPPVSKRRKGQELFSGTTAKDPSSHRLVQFQQANHIKASAPLSSAPVARNGDNGAPGHAKFTYRSLLADIIQPRDLKEVCSVLVVLSSEVAKKLADQKNAKEEQGKNRTETSLASPIEDKLQRQKISHEEVAVKGDCSSSANQDGKISPNDSTSDGLDEPKERPMSPGTLALMCDEQDTMFVPTSSSNGLLSTSSHSPSGQELTEVHAEQELIVLTKFRECLHKLITLGEIKEKWSFRARNEEGNQTTARTETEGQPGPISNGLAKAAIPPMPKDPRLKNPILPENGNNKLMASFEVKKS 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1559684 1563913 + Conep02aG0031300.1 Cone2ag0303 432770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0303 565 MobiDBLite consensus disorder prediction 17 32 - -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 1 33 - -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 1 16 - -
Cone2ag0303 565 ProSiteProfiles CRC domain profile. 104 228 IPR005172 -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 359 434 - -
Cone2ag0303 565 SMART CXC_2 103 143 IPR033467 -
Cone2ag0303 565 SMART CXC_2 188 229 IPR033467 -
Cone2ag0303 565 Coils Coil 138 158 - -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 359 373 - -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 401 419 - -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 506 565 - -
Cone2ag0303 565 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 225 IPR005172 -
Cone2ag0303 565 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Cone2ag0303 565 MobiDBLite consensus disorder prediction 506 523 - -
Cone2ag0303 565 PANTHER TESMIN/TSO1-RELATED 46 500 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0303 Cone-Chr2:1559684 Cone7ag0677 Cone-Chr7:3722160 2.09E-223 dispersed
Cone16ag0733 Cone-Chr16:8445233 Cone2ag0303 Cone-Chr2:1559684 1.31e-317 wgd
Cone2ag0303 Cone-Chr2:1559684 Cone4ag0740 Cone-Chr4:4067839 7.60E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45698 PF00646 F-box 1.30E-06 CL0271 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0303 - - - 0.0