Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0439 ATGTCTCTCCTCTTGATCATCACCATAACCATCCTCTCAATCCAAATCCCACCATCTATCTCCCAAGATGACGCAGAAAAATATCAAAATTGCAGCAAAACTTTCACATGTGGAGATTTGAAGGTGGACCTAGGCTACCCGTTCTCGGGCTCGACCCGAGCCTCATACTGCGGCCACCCCGGCTTCAACCTCAACTGCAACAGGGATGCCCCGATAATCACAATCAACTCGATCGACTATACAATAATCGATGTTGATAACACCACACAGAGGATCACAATCGCGAGCTCAAATTACTACAATACCATTTGCCCCGACAGCCTCATAGACACTACTATTGATTTCTCCCTCTTTAACTATGCTTCTACTGCAGTGAACCTCACTCTACTCTATAATTGCCCGACTTCTGCTATTCCGGCAGACTTCATCTGCCAGACAGGCACTTATAGTTACGTTGAGAAACAGGGCTTAAGCGTCACGGAAAGTTATTGCAGGACAGTGTTTGTGACCGTTTCTTCATCGGAATACTCGAGTGTCTTGGCAAATCCTAGTTCGGGCACAGTAGTTGATGCTTTTGATGCTGGGTTTGAATTGCAGTGGAAGTTAGATAATGGGGTATGTAATGAATGTATAGAGTCTGGAGGGGGGTGTGGTTGGAACACAAGTGCAGATGCTTTTGCCTGTTATTGTGAGGAGGGAGCATTTTCATCTACTTGTGGAAGTGGACCGACAGGGAAGAAGAGTAGTAAAAAGACAGCCCTTATAGCAGCGGTATCAGGCGGAGCTGCTGGAATTGTACTGTTATTGCTCGGCTGCTGGATTTTCGTAATCAAAAAGAAGAAGAAGATAAATGCAGTGAAATCTATAGGCAAAGATAGTTCTACACCTCCTTCAAGTATAGTTGCTTCTACTTCCATTACTGACTTCCCTAAAAGCATCCCTTCTTACCTGTATTCAAAATCCGACCTCGAAAAGAGCAGCACGTACTTCGGAACTCGGATCTTCAGCTACGAAGAACTCATGGAAGCCACTGACAATTTCCACCCTTCAAAACAACTTGGAGATGGAGGCTTTGGCACTGTTTACTATGGTGAGCTCAAGGACGGACGGGTAGTTGCGGTGAAGAGATTGTACGAGAACAATTTCAAACGGGTCGAGCAGTTCATGAACGAAGTAGAAATCTTAACACGTCTACGACACAAGAACCTAGTGAAGCTTTACGGGTGCACTTCAAAACGTAGTAGAGAACTCCTCCTTGTCTATGAATACATTTCGAACGGAACAGTAGCCGACCATCTTCATAGAAACCAAACAAGCTCCGATGATAAGTCCCGTTTGCTCCCATGGTCAGTCCGGTTAAGCATTGCCATAGAAACGGCAGATGCTTTGGCTTACCTCCATAGATCGGATACTATTCACCGAGATGTGAAAACCAACAACATTTTACTAGAAGATGATTTTCGTGTCAAAGTGGCTGATTTCGGTTTATCTAGATTGTTCCCTACTCAGGTCACCCATGTGTCAACGGCTCCACAGGGGACACCCGGGTACGTTGACCCAGAGTATTACCAGAGTTATAAGCTGACTGATAAGAGTGATGTTTATAGCTTCGGAGTGGTTCTGGTTGAGCTTTTATCGTCATTGCAAGCTGTGGATACAAACAGGAACAGACAAGATATCAATTTGGCCAGCATGATGGTGAACAAGATTGTGAACCATCAATTGAACGAGTTGGTGGACCCGCGTCTCGGGTTTGAGAATGATGAGGTTGTAAGAAAGGCGGCTACTTCCGTGGCGGCATTGGCTTTTCAGTGTTTGCAACAAGAGAAGGAGATGAGACCGTCCATGGAGGAAGTGTTGAAGGGTTTGAGGGAGATCGAGAAGGAACAGGCAGGCAGTTTGAAAGCAGAAGTGGATATTTGTACAGATGATGATATCGGGCTTTTGAAGAGCATGCCACCTCCTTTCTCGCCGGATTCTGTTGTGACGGAGAATCTGGTACCTGGAAAATTCTTCCACGCTCTTTCGGTAATGGGGTATAAATCTTAA 2049 45.34 MSLLLIITITILSIQIPPSISQDDAEKYQNCSKTFTCGDLKVDLGYPFSGSTRASYCGHPGFNLNCNRDAPIITINSIDYTIIDVDNTTQRITIASSNYYNTICPDSLIDTTIDFSLFNYASTAVNLTLLYNCPTSAIPADFICQTGTYSYVEKQGLSVTESYCRTVFVTVSSSEYSSVLANPSSGTVVDAFDAGFELQWKLDNGVCNECIESGGGCGWNTSADAFACYCEEGAFSSTCGSGPTGKKSSKKTALIAAVSGGAAGIVLLLLGCWIFVIKKKKKINAVKSIGKDSSTPPSSIVASTSITDFPKSIPSYLYSKSDLEKSSTYFGTRIFSYEELMEATDNFHPSKQLGDGGFGTVYYGELKDGRVVAVKRLYENNFKRVEQFMNEVEILTRLRHKNLVKLYGCTSKRSRELLLVYEYISNGTVADHLHRNQTSSDDKSRLLPWSVRLSIAIETADALAYLHRSDTIHRDVKTNNILLEDDFRVKVADFGLSRLFPTQVTHVSTAPQGTPGYVDPEYYQSYKLTDKSDVYSFGVVLVELLSSLQAVDTNRNRQDINLASMMVNKIVNHQLNELVDPRLGFENDEVVRKAATSVAALAFQCLQQEKEMRPSMEEVLKGLREIEKEQAGSLKAEVDICTDDDIGLLKSMPPPFSPDSVVTENLVPGKFFHALSVMGYKS 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2358824 2362442 - Conep02aG0045000.1 Cone2ag0439 432906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0439 682 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 664 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cone2ag0439 682 Pfam Wall-associated receptor kinase C-terminal 154 232 IPR032872 -
Cone2ag0439 682 Pfam Wall-associated receptor kinase galacturonan-binding 31 95 IPR025287 GO:0030247(InterPro)
Cone2ag0439 682 Gene3D Transferase(Phosphotransferase) domain 1 424 645 - -
Cone2ag0439 682 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Cone2ag0439 682 FunFam Wall-associated receptor kinase-like 20 424 636 - -
Cone2ag0439 682 CDD STKc_IRAK 353 626 - -
Cone2ag0439 682 SMART serkin_6 347 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0439 682 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 319 423 - -
Cone2ag0439 682 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
Cone2ag0439 682 ProSiteProfiles Protein kinase domain profile. 347 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone2ag0439 682 Pfam Protein tyrosine and serine/threonine kinase 350 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone2ag0439 682 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0560 Cone-Chr16:7508271 Cone2ag0439 Cone-Chr2:2358824 0 dispersed
Cone16ag0562 Cone-Chr16:7527386 Cone2ag0439 Cone-Chr2:2358824 6.92E-102 dispersed
Cone16ag0564 Cone-Chr16:7530330 Cone2ag0439 Cone-Chr2:2358824 2.47E-236 dispersed
Cone18ag1190 Cone-Chr18:8501767 Cone2ag0439 Cone-Chr2:2358824 1.78E-200 dispersed
Cone19ag0348 Cone-Chr19:2850552 Cone2ag0439 Cone-Chr2:2358824 2.33E-160 dispersed
Cone19ag0816 Cone-Chr19:6495488 Cone2ag0439 Cone-Chr2:2358824 3.98E-138 dispersed
Cone19ag0983 Cone-Chr19:7419903 Cone2ag0439 Cone-Chr2:2358824 3.51E-78 dispersed
Cone2ag0439 Cone-Chr2:2358824 Cone6ag0428 Cone-Chr6:2080564 5.49E-98 dispersed
Cone2ag0437 Cone-Chr2:2350642 Cone2ag0439 Cone-Chr2:2358824 1.91E-176 proximal
Cone11ag0305 Cone-Chr11:1489818 Cone2ag0439 Cone-Chr2:2358824 6.44E-198 wgd
Cone13ag0807 Cone-Chr13:7428880 Cone2ag0439 Cone-Chr2:2358824 9.13E-116 wgd
Cone19ag0814 Cone-Chr19:6491436 Cone2ag0439 Cone-Chr2:2358824 6.03E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g289 . . . Bda15g00513 . Bpe13g00359 Bma06g00049 . Cmo13g01055 . Cma10g00308 Cma11g00286 Car10g00292 Car11g00260 . . . . . . . . . . Cla06g01453 . . . . . . Cone11ag0305 Cone18ag1190 Cone2ag0439 Cone16ag0560 Lsi02g00194 Csa01g00680 . Cme12g01864 . . . . . Bpe15g00530 Bma03g00899 Bma08g00058 . Cmo10g00329 Cmo11g00288 Cma13g01013 . Car13g00846 . . . Bhi08g01255 . . . . . . Cla04g01079 . . . . . . Lsi06g01317 Csa01g00398 Chy02g02350 Cme02g01727
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000747 2 6 3 2 2 2 3 2 2 4 1 3 3 1 5 3 2 5 3 2 3 1 2 3 5 3 2 2 6 1 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82602 PF04053 Coatomer_WDAD 3.60E-163 CL0186 Cone PK