Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0475 ATGAAGAGAGGACTTGACCAGGAAGAACCGTCAATGACATTTCATACAGGTAAGGCGAAGCTCATCTGGAAAGAAGTAAAAGAAGAAGAAGAAGACGAGCAGCACGAGAAAAAAGAAGCAGAACGCCGCAGGGATCTCCCAACCGTCTTCGGCGGCGGCGGGGGTATGGATGAGCTGCTGGCCGTTCTGGGTTACAAGGTACGTTCATCGGAGATGGCTGACGTGGCGGAGAAGCTTGAACAACTGGAAATGGTGATGGGCTCAGCAGCTCAAGAAGATGGGGCTTCTAATCTGTATAACGATACTGTTCATTACAACCCGTCTGATCTTTCTAGCTGGGTCGAAAACATGCTGTCTGAATTCAACGATCCTCTCATAACGCAATCTCAAACTGGCGTTCGAAACAGCGTTTACGAGGATGATTCCGAGTACGATCTGAGAGCAATCCCAGGCATTGCAGCTAACTACCCATCACCACCACCGCCGCCACAAAACAGCTCAGAAAACCAGCCTTCAAAGCGGTTCAAATCCTCGACCGAGTTTAGTCCACCCAAAGCGCTTGTACCTCCCTATTCCGAACCGTCCCGGTCTGTAGTCGTCATCGACACACAAGAAGCCGGCGTGAGGCTAGTCCACACTCTCATGGCTTGCGCCGAAGCCGTCCAGCAGGACAATCTCAAGCTAGCCGACGCGCTCATAAAGCAAATTGGCTTATTAGCCGCATCTCAAGCTGGAGCCATGCGGAAAGTCGCGACTTACTTTGCAGAAGCTCTGGCTCGTCGTGTTTACCGCATCTTCCCTCAAGGCGGTCTTGAATTCGACACGGCGTATTGTGATGTTCTTCAGATGCATTTCTATGAATCCTGCCCTTACCTTAAGTTTGCGCATTTCACGGCGAATCAACTCATACTCGGGTCGTTCAATTCTACCTCTAAGAACAGAGTTCATGTGATCGATTTCGGGCTGAAACAGGGGATGCAATGGCCCGCTTTAATGCAGGCTCTTGCGTTACGGCCTGGTGGGCCTCCGGTTTTCCGCCTCACCGCGATCAGCCCGCCTCAGCTGGACAACTCGGACGGACTTCAGCAGGTGGGGTGGAAACTGGCCCAGTTTGCGGATACACTTGGCATCGAGTTCGAGTTCCGGGGGCTTATTTGTAACAGCTTGGCTGATATTGAACCGGTCCTGTTTAATATAGGCCGGCCCGAGATCGAGACCGCGGCGGTTAACTCGGTTCTCGAGCTTCACCGTTTTCTGGCCCATCCCAGTTCGATAGAGAAGGTTCTGTGTTTGATCAAAGCGATGAGACCAAAAATTGTGACTATTGTGGAGCAGGAAGGGAATCATAATGGACCGGTTTTTGTGGAGAGGTTCAATGAGGCGCTGAATTATTACTCGAACCTGTTTGACTCGCTCGAGGTGGTCGGCCCGCCGAATCAAGATGTCCTTATGTCGGAGGTGTATTTGGGTAGGCAGATATGTAATGTGGTGGCTTGTGAAGGTGTGGATCGGGTGGAGCGGCACGAGACATTGGCTCAGTGGCAGGTCCGGTTGGGTTCGGCCGGTTTTGACCCCGTTCATATCGGATCGAATGGGTTCAAGCAGGCAAGTACTTTGTTGGCGCTTTTTGCGGGGAGAGAGGGGTATGGAGTGGAGGAGAGGAATGGTTGCTTGATGCTTACTTGGCATACTCGGCCGTTGATTGCAATGTCGGCTTGGCAGCCCGGCGGATGCGGAGGTGATGGGGAGACTCAGTGA 1758 52.28 MKRGLDQEEPSMTFHTGKAKLIWKEVKEEEEDEQHEKKEAERRRDLPTVFGGGGGMDELLAVLGYKVRSSEMADVAEKLEQLEMVMGSAAQEDGASNLYNDTVHYNPSDLSSWVENMLSEFNDPLITQSQTGVRNSVYEDDSEYDLRAIPGIAANYPSPPPPPQNSSENQPSKRFKSSTEFSPPKALVPPYSEPSRSVVVIDTQEAGVRLVHTLMACAEAVQQDNLKLADALIKQIGLLAASQAGAMRKVATYFAEALARRVYRIFPQGGLEFDTAYCDVLQMHFYESCPYLKFAHFTANQLILGSFNSTSKNRVHVIDFGLKQGMQWPALMQALALRPGGPPVFRLTAISPPQLDNSDGLQQVGWKLAQFADTLGIEFEFRGLICNSLADIEPVLFNIGRPEIETAAVNSVLELHRFLAHPSSIEKVLCLIKAMRPKIVTIVEQEGNHNGPVFVERFNEALNYYSNLFDSLEVVGPPNQDVLMSEVYLGRQICNVVACEGVDRVERHETLAQWQVRLGSAGFDPVHIGSNGFKQASTLLALFAGREGYGVEERNGCLMLTWHTRPLIAMSAWQPGGCGGDGETQ 585
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 2552787 2555075 - Conep02aG0048700.1 Cone2ag0475 432942
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0475 585 Coils Coil 72 92 - -
Cone2ag0475 585 FunFam DELLA protein GAI 55 121 - -
Cone2ag0475 585 MobiDBLite consensus disorder prediction 26 50 - -
Cone2ag0475 585 SMART DELLA_2 57 131 - -
Cone2ag0475 585 MobiDBLite consensus disorder prediction 151 192 - -
Cone2ag0475 585 Pfam Transcriptional regulator DELLA protein N terminal 57 123 IPR021914 -
Cone2ag0475 585 ProSiteProfiles GRAS family profile. 201 574 IPR005202 -
Cone2ag0475 585 Coils Coil 23 43 - -
Cone2ag0475 585 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 573 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cone2ag0475 585 Gene3D - 55 121 IPR038088 -
Cone2ag0475 585 Pfam GRAS domain family 210 574 IPR005202 -
Cone2ag0475 585 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0475 Cone-Chr2:2552787 Cone6ag0390 Cone-Chr6:1896382 1.08E-197 dispersed
Cone13ag0741 Cone-Chr13:7068584 Cone2ag0475 Cone-Chr2:2552787 5.97E-214 wgd
Cone16ag0528 Cone-Chr16:7324283 Cone2ag0475 Cone-Chr2:2552787 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45708 PF00069 Pkinase 9.40E-31 CL0016 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0475 K14494 - cit:102629959 713.375