Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0486 ATGCTCGGAACCTTGGAGAGGTACCAGAAATGCAGTTATAGCTCATCCGATCATCAAGTTAGCAAACCTGCCCGTGAACTGGAGAGCAGCTATCGAGAGTACATGAAACTGAAGGCTACATTTGAATCCCTACAAAGAACTCAAAGGAACTTTCTGGGAGAAGACTTGGGCCCACTAAACTCAAAAGAGCTTGAGCAGCTTGAGCGTCAGCTTGAGTCTTCACTCAAGCAAGTTAGGTTCACTAAGACCCAGTATATGCTGGACCAGCTTTCGGATCTTCAAAACAAGGAGCACATGTTGATGGAAGCTAACAGATCTCTAACTATGAAGCTAGATGAAGTGAGCATAAGAAATCATCATCACCTCAGGCAATCATGGGAAGGGGCCGAACAAGGCTTCTCATTCGCTCCTCCACCTCCTCCTCCTCCTCCTCCTTCACATCATCCCGAACATGATAACGATCACAATGCTCACTCTCAGGCCTTCTTTCAGCCTCTCGATTGCAATCCCACTTTGCAAATCGGGTATTCTCAGGCAGTGTCGGAACAGATGACTGCTAGCAGCTCAGGCACGAATCAAGGCCAACTACAAGTACATGGTTTCCTCCATGGATGGATGCTTTAA 624 47.12 MLGTLERYQKCSYSSSDHQVSKPARELESSYREYMKLKATFESLQRTQRNFLGEDLGPLNSKELEQLERQLESSLKQVRFTKTQYMLDQLSDLQNKEHMLMEANRSLTMKLDEVSIRNHHHLRQSWEGAEQGFSFAPPPPPPPPPSHHPEHDNDHNAHSQAFFQPLDCNPTLQIGYSQAVSEQMTASSSGTNQGQLQVHGFLHGWML 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2633642 2635125 - Conep02aG0049800.1 Cone2ag0486 432953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0486 207 MobiDBLite consensus disorder prediction 130 157 - -
Cone2ag0486 207 ProSiteProfiles K-box domain profile. 27 117 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone2ag0486 207 Coils Coil 64 84 - -
Cone2ag0486 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 154 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone2ag0486 207 Pfam K-box region 24 111 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0486 K09264 - - mdm:103404655 248.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0608 Cone-Chr14:3029221 Cone2ag0486 Cone-Chr2:2633642 4.96E-33 dispersed
Cone15ag0345 Cone-Chr15:1605768 Cone2ag0486 Cone-Chr2:2633642 4.94E-14 dispersed
Cone15ag0614 Cone-Chr15:3192831 Cone2ag0486 Cone-Chr2:2633642 1.71E-40 dispersed
Cone2ag0486 Cone-Chr2:2633642 Cone4ag1281 Cone-Chr4:10526697 4.46E-09 dispersed
Cone2ag0486 Cone-Chr2:2633642 Cone18ag1146 Cone-Chr18:8262260 7.11E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g996 . . . . . . . . Cmo14g01181 Cmo01g00454 Cma01g00423 Cma14g01149 . . . Cpe03g00970 . . . . . . . . . . . . . . . . Cone18ag1146 Cone2ag0486 . . . . Cme07g01021 . . . . . . . . . . . . . . . Cpe02g01397 . Bhi01g02244 . . . . Mch10g0860 . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone7ag1502 . 1 138 MADS-box Gene Family AT5G20240 65.5 8.2e-46 180.6
Cone10ag1416 . 12 251 MADS-box Gene Family AT3G58780 63.8 4.9e-75 278.5
Cone6ag0933 . 18 274 MADS-box Gene Family AT3G58780 58.5 1.1e-71 267.3
Cone9ag0936 . 18 271 MADS-box Gene Family AT3G58780 58.1 9.9e-68 254.2
Cone17ag0728 . 1 187 MADS-box Gene Family AT3G58780 62.6 6.2e-62 235.0
Cone2ag0486 . 1 207 MADS-box Gene Family AT5G15800 55.2 2.1e-52 203.4
Cone18ag1146 . 1 198 MADS-box Gene Family AT5G15800 55.4 6.2e-49 191.8
Cone1ag1119 . 1 173 MADS-box Gene Family AT5G15800 57.4 1.0e-43 174.5
Cone1ag1119 . 1 169 MADS-box Gene Family AT2G03710 53.5 2.4e-39 159.5
Cone1ag1119 . 1 168 MADS-box Gene Family AT3G02310 57.9 7.4e-42 167.9
Cone2ag0486 . 1 110 MADS-box Gene Family AT3G02310 75.5 9.9e-39 157.5
Cone10ag1416 . 25 253 MADS-box Gene Family AT2G42830 65.1 9.3e-71 264.2
Cone6ag0933 . 18 274 MADS-box Gene Family AT2G42830 55.7 5.0e-64 241.9
Cone9ag0936 . 18 242 MADS-box Gene Family AT2G42830 60.9 2.1e-62 236.5
Cone17ag0728 . 1 183 MADS-box Gene Family AT2G42830 64.9 2.3e-61 233.0
Cone18ag1119 . 1 172 MADS-box Gene Family AT2G45650 54.7 1.0e-40 164.5
Cone11ag0371 . 1 172 MADS-box Gene Family AT2G45650 52.9 1.6e-38 157.1
Cone15ag0346 . 1 171 MADS-box Gene Family AT2G45650 50.9 2.0e-36 150.2
Cone16ag0224 . 63 190 MADS-box Gene Family AT1G69120 62.8 1.2e-36 150.6
Cone16ag0224 . 63 252 MADS-box Gene Family AT5G60910 53.9 1.2e-40 163.7
Cone14ag0608 . 3 178 MADS-box Gene Family AT1G24260 60.1 2.1e-48 189.9
Cone15ag0614 . 1 191 MADS-box Gene Family AT1G24260 54.9 3.7e-48 189.1
Cone1ag1119 . 1 174 MADS-box Gene Family AT1G24260 53.9 1.1e-41 167.5
Cone16ag0224 . 1 158 MADS-box Gene Family AT1G24260 53.0 4.0e-39 159.1
Cone16ag0224 . 1 199 MADS-box Gene Family AT1G26310 61.7 3.0e-64 242.7
Cone17ag0728 . 1 230 MADS-box Gene Family AT4G09960 64.4 6.4e-74 274.6
Cone10ag1416 . 25 201 MADS-box Gene Family AT4G09960 71.8 7.1e-65 244.6
Cone6ag0933 . 20 207 MADS-box Gene Family AT4G09960 67.6 1.6e-64 243.4
Cone9ag0936 . 20 206 MADS-box Gene Family AT4G09960 68.1 1.8e-63 240.0
Cone4ag1281 . 1 149 MADS-box Gene Family AT4G09960 51.0 4.8e-37 152.1
Cone1ag1119 . 1 171 MADS-box Gene Family AT3G61120 53.2 1.5e-44 177.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G11880 54.1 2.6e-48 189.5
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G11880 55.4 1.3e-47 187.2
Cone18ag1119 . 1 205 MADS-box Gene Family AT4G11880 53.5 3.8e-47 185.7
Cone15ag0131 . 1 202 MADS-box Gene Family AT4G11880 52.2 4.0e-41 165.6
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G11880 51.6 1.2e-40 164.1
Cone4ag1281 . 1 222 MADS-box Gene Family AT2G22630 63.7 7.8e-56 214.5
Cone20ag0564 . 1 218 MADS-box Gene Family AT2G22630 50.4 6.2e-53 204.9
Cone10ag1087 . 1 224 MADS-box Gene Family AT2G22630 58.4 7.5e-51 198.0
Cone11ag0371 . 1 204 MADS-box Gene Family AT4G22950 59.2 1.2e-53 207.2
Cone15ag0346 . 1 218 MADS-box Gene Family AT4G22950 54.8 7.8e-53 204.5
Cone18ag1119 . 1 213 MADS-box Gene Family AT4G22950 55.0 1.5e-51 200.3
Cone14ag0123 . 1 212 MADS-box Gene Family AT4G22950 52.8 5.6e-43 171.8
Cone15ag0131 . 1 212 MADS-box Gene Family AT4G22950 50.2 4.0e-41 165.6
Cone15ag0346 . 1 158 MADS-box Gene Family AT2G45660 75.3 5.8e-58 221.1
Cone11ag0371 . 1 155 MADS-box Gene Family AT2G45660 73.5 1.2e-55 213.4
Cone18ag1119 . 1 156 MADS-box Gene Family AT2G45660 70.5 3.9e-54 208.4
Cone14ag0123 . 1 156 MADS-box Gene Family AT2G45660 62.8 8.1e-44 174.1
Cone15ag0131 . 1 156 MADS-box Gene Family AT2G45660 60.9 1.4e-43 173.3
Cone4ag1281 . 1 229 MADS-box Gene Family AT4G37940 59.3 3.0e-57 219.2
Cone20ag0564 . 1 216 MADS-box Gene Family AT4G37940 55.4 5.6e-56 214.9
Cone10ag1087 . 1 164 MADS-box Gene Family AT4G37940 67.1 3.5e-50 195.7
Cone9ag1445 . 2 234 MADS-box Gene Family AT2G22540 64.8 6.9e-71 264.6
Cone6ag1530 . 2 157 MADS-box Gene Family AT2G22540 76.3 3.2e-60 229.2
Cone7ag0856 . 1 233 MADS-box Gene Family AT2G22540 54.7 5.9e-54 208.4
Cone17ag1176 . 3 238 MADS-box Gene Family AT2G22540 51.9 2.7e-51 199.5
Cone4ag1298 . 1 235 MADS-box Gene Family AT2G22540 54.3 1.8e-50 196.8
Cone7ag0856 . 1 232 MADS-box Gene Family AT4G24540 57.9 6.8e-57 218.0
Cone17ag1176 . 3 238 MADS-box Gene Family AT4G24540 53.8 2.0e-56 216.5
Cone4ag1298 . 1 234 MADS-box Gene Family AT4G24540 56.6 2.2e-55 213.0
Cone20ag0555 . 3 238 MADS-box Gene Family AT4G24540 53.0 1.6e-53 206.8
Cone9ag1445 . 2 231 MADS-box Gene Family AT4G24540 53.5 6.0e-53 204.9
Cone6ag1530 . 2 176 MADS-box Gene Family AT4G24540 60.0 3.6e-50 195.7
Cone6ag1100 . 1 158 MADS-box Gene Family AT5G23260 53.2 7.1e-40 161.8
Cone15ag0131 . 1 150 MADS-box Gene Family AT5G62165 64.0 1.7e-46 183.0
Cone15ag0346 . 1 145 MADS-box Gene Family AT5G62165 63.4 4.9e-46 181.4
Cone11ag0371 . 1 145 MADS-box Gene Family AT5G62165 62.1 7.1e-45 177.6
Cone18ag1119 . 1 145 MADS-box Gene Family AT5G62165 60.0 6.0e-44 174.5
Cone14ag0123 . 1 150 MADS-box Gene Family AT5G62165 60.0 5.1e-43 171.4
Cone10ag1087 . 1 143 MADS-box Gene Family AT2G14210 78.5 1.7e-53 206.8
Cone4ag1281 . 1 141 MADS-box Gene Family AT2G14210 77.6 4.9e-53 205.3
Cone20ag0564 . 1 142 MADS-box Gene Family AT2G14210 72.7 3.3e-49 192.6
Cone5ag1604 . 41 158 MADS-box Gene Family AT1G29960 54.2 2.6e-37 152.1
Cone15ag0131 . 1 144 MADS-box Gene Family AT5G51870 59.3 4.6e-41 165.2
Cone14ag0123 . 1 144 MADS-box Gene Family AT5G51870 57.9 5.7e-39 158.3
Cone18ag1119 . 1 144 MADS-box Gene Family AT5G51870 55.9 4.8e-38 155.2
Cone15ag0346 . 1 144 MADS-box Gene Family AT5G51870 53.8 5.3e-37 151.8
Cone11ag0371 . 1 144 MADS-box Gene Family AT5G51870 54.5 1.2e-36 150.6
Cone15ag0131 . 1 212 MADS-box Gene Family AT5G51860 52.6 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000282 9 8 5 10 6 4 8 4 4 3 4 4 6 4 4 6 4 4 5 4 4 4 4 4 3 4 4 4 6 4 147