Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0489 ATGACTGAACCTTCTTCTACTATTTCTCCAACACCATTGTTGAAGGATGAGCTGGACATTGTGATCCCAACAATAAGGAATTTGGACTTCCTCGAAATGTGGAGGCCATTTTTACAACCCTACCACCTTATTATTGTTCAAGATGGTGACCCATCTAAGACAATTAATGTCCCTGAGGGATTTGATTACGAGCTCTATAATCGTAACGATATTAACCGGATTCTCGGTCCGAGATCCTCTTGCATTTCCTTCAAGGATTCTGCTTGTAGATGCTTTGGCTACATGGTCTCCAAGAAGAAGTATATCTTCACCATTGATGATGACTGTTTTGTAGCAAAAGACCCATCAGGCAAGCTGATCAATGCACTAGAGCAGCACATAAAGAACATACTATCACCCTCAACTCCATTATTCTTCAACACACTCTACGACCCTTATAGAGAGGGAGCTGACTTCGTCAGAGGGTATCCCTTCAGCTTAAGGGAAGGTGTCCCAACTGCAGTTTCACACGGGCTTTGGCTCAACATTCCAGATTATGATGCACCCACACAGCTGGTGAAGCCTCGTGAGAGGAACACTAGGTATGTTGATGCTGTCCTCACCATTCCAAAGGGCACTTTGTTCCCTATGTGTGGCATGAACTTGACCTTCGATCGTGATCTTATTGGGCCTGCTATGTACTTTGGGCTCATGGGTGATGGTCAGCCCATTGGACGCTATGATGACATGTGGGCTGGTTGGTGTGTTAAGGTTATATGCGACCATTTGGGATTGGGAGTGAAAACAGGGCTACCATATATATGGCACAGCAAAGCAAGCAACCCATTTGTGAACTTGAAGAAGGAATACAAGGGCATCTTCTGGCAAGAAGACATAATCCCATTCTTCCAATCCGTTGTTCTGCCCAAGGATTGCACCAGTGTCCAAAAATGCTACATTGAGCTGTCCAAAGAGGTGAAAGATAAGCTTGGTAGAATTGATCCTTATTTTGACAAGCTAGCTGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTCAATCCGGCCATCGCCGATTCTGCTAAACAAGCATAG 1077 44.85 MTEPSSTISPTPLLKDELDIVIPTIRNLDFLEMWRPFLQPYHLIIVQDGDPSKTINVPEGFDYELYNRNDINRILGPRSSCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNILSPSTPLFFNTLYDPYREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTIPKGTLFPMCGMNLTFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQSVVLPKDCTSVQKCYIELSKEVKDKLGRIDPYFDKLADAMVTWIEAWDELNPAIADSAKQA 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2653343 2654988 - Conep02aG0050200.1 Cone2ag0489 432956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0489 358 Pfam Reversibly glycosylated polypeptide 14 348 IPR037595 -
Cone2ag0489 358 PIRSF UPTG 8 352 IPR004901 GO:0016866(InterPro)|GO:0071669(InterPro)
Cone2ag0489 358 PANTHER UDP-ARABINOSE MUTASE 7 349 IPR037595 GO:0005794(PANTHER)|GO:0005829(PANTHER)|GO:0009832(PANTHER)|GO:0033356(PANTHER)|GO:0052691(PANTHER)
Cone2ag0489 358 SUPERFAMILY Nucleotide-diphospho-sugar transferases 19 247 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0489 K13379 - - vvi:100248032 681.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1679 Cone-Chr1:57909754 Cone2ag0489 Cone-Chr2:2653343 9.64E-132 dispersed
Cone2ag0489 Cone-Chr2:2653343 Cone6ag0517 Cone-Chr6:2583289 8.43E-251 dispersed
Cone13ag0027 Cone-Chr13:175726 Cone2ag0489 Cone-Chr2:2653343 8.32E-68 wgd
Cone16ag0516 Cone-Chr16:7198955 Cone2ag0489 Cone-Chr2:2653343 1.27E-272 wgd
Cone19ag0036 Cone-Chr19:249307 Cone2ag0489 Cone-Chr2:2653343 1.04E-244 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0489 Cone16ag0516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140