Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone2ag0536 ATGGCGGATGCCGATAAATCCTCAAGAGCTAAAAGTCCGCCTCCGCGGCCGACGATTACACTGCCGCCAAGGTCTTCTTTGGAGGCAATTTTCGGCGGCGGCGGAGTAGGAGCTAGCCCTGGGCCTATGACTCTGGTCTCTAGCTTCTTCCCGGAGAATTACGCCGACTCACCGGACTATCACCGGTCCTTCTCTCATCTACTCGCCGGAGCTATTGGATCGCCTATGGCTATGGGATTCTTCAGCCCTAATCCGACGAATAATTCTTCCGCCAAGGAAGGAAATGTGTCTGATAAAGAATTGGGGTTTAAACAGAGTAGGCCTGTGAATTTGGTGGTTGCTCGATCCCCTATGTTTACTATCCCGCCGGGATTAAGCCCCTCTGGCTCGCTTAACTCGCCTGCGTTCTTCCCCCCTCAGAGTCCATTTGGAATTTCACACCAGCAAGCTTTAGCACAAGTTACGGCTCAAGCTTTTGCTCATTCTCATATGCAAATGCATGAGCAAATGCAAATAGAATATCAACCTTCATCAATACCACCTGCTAAGGAATCATCATCACCAAATCATAGTTCCTTTACTTTGGACGAGCAATCTCAGCCGTCAATCTTACCTTCCACATCAGACCCAAAAAGCTCTGTAATTGAATCAGTTGAGGCCGTTCATACTGAAAGGAAATATCAACCTATTTCGCAGCCGTCCGACCGACCTAGCGATGATGGGTACAATTGGAGGAAGTATGGACAGAAGCAGGTTAAAGGGAGTGAATTTCCGAGAAGTTATTACAAGTGTACGCATCCGAGTTGTCCTGTTAAGAAGAAGGTGGAGAGATCTCCTGATGGGCAGATAACTGAGATTATTTACAAAGGCCAGCATAACCATGCAGCTTCGTCTAATAAACGAGGAAAAGATGGTAGTGAAGCAAATGGTAATGTGAATTCGCAAAGGCAAATTGGGAATGTGAACAAGTCGAGTGAAGCTGTGCAAGTGCGTTCTAGTGATAGTGAAGAAATGGGAGAGACTGAGGCAACGGAAGATAGGGATGGTGATGAGCCTAATCCAAAGAGAAGGAATATAGAGGCTGGAACAAGCGGGGTCTCTTTGCCACATAAGACACTTACAGAACCAAAGATTGTTGTGCAAACAAGAAGTGAGGTTGACCTTTTAGACGACGGGTATAGATGGCGTAAGTATGGGCAGAAAGTCGTCAAAGGCAATCCTTATCCAAGGAGCTACTATAAATGCACTTGTGCTGGATGCAATGTCCGTAAGCATGTAGAAAGAGCTGCCACCGATCCAAAAGCTGTAATAACAACTTATGAAGGGAAACATAACCATGATGTCCCTGCAGCAAGAAACAGCAGCCACAATACAGCCAATAATAACCAAGCTCAGACAAAACCACATAAATTTCTGTCCCAGAAACAACCTTTGTCTAAAGAAATGGATTTCGAAACAACCAACCAAAGACCGGGCATTCTAAGGCTCAAGGAAGAACAAGTCACAATGTAA 1512 45.83 MADADKSSRAKSPPPRPTITLPPRSSLEAIFGGGGVGASPGPMTLVSSFFPENYADSPDYHRSFSHLLAGAIGSPMAMGFFSPNPTNNSSAKEGNVSDKELGFKQSRPVNLVVARSPMFTIPPGLSPSGSLNSPAFFPPQSPFGISHQQALAQVTAQAFAHSHMQMHEQMQIEYQPSSIPPAKESSSPNHSSFTLDEQSQPSILPSTSDPKSSVIESVEAVHTERKYQPISQPSDRPSDDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSPDGQITEIIYKGQHNHAASSNKRGKDGSEANGNVNSQRQIGNVNKSSEAVQVRSSDSEEMGETEATEDRDGDEPNPKRRNIEAGTSGVSLPHKTLTEPKIVVQTRSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTCAGCNVRKHVERAATDPKAVITTYEGKHNHDVPAARNSSHNTANNNQAQTKPHKFLSQKQPLSKEMDFETTNQRPGILRLKEEQVTM 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2960579 2963340 + Conep02aG0054900.1 Cone2ag0536 433003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone2ag0536 503 SUPERFAMILY WRKY DNA-binding domain 236 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 MobiDBLite consensus disorder prediction 447 477 - -
Cone2ag0536 503 MobiDBLite consensus disorder prediction 302 332 - -
Cone2ag0536 503 MobiDBLite consensus disorder prediction 1 34 - -
Cone2ag0536 503 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 153 466 IPR044810 GO:0003700(InterPro)
Cone2ag0536 503 MobiDBLite consensus disorder prediction 178 372 - -
Cone2ag0536 503 FunFam WRKY transcription factor 33 376 442 - -
Cone2ag0536 503 MobiDBLite consensus disorder prediction 178 214 - -
Cone2ag0536 503 Pfam WRKY DNA -binding domain 239 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 MobiDBLite consensus disorder prediction 451 477 - -
Cone2ag0536 503 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 SMART WRKY_cls 238 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 Gene3D WRKY domain 374 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 Gene3D WRKY domain 226 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 ProSiteProfiles WRKY domain profile. 239 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone2ag0536 503 FunFam WRKY transcription factor 225 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0270 Cone-Chr10:1287334 Cone2ag0536 Cone-Chr2:2960579 5.54E-70 dispersed
Cone19ag1289 Cone-Chr19:8736402 Cone2ag0536 Cone-Chr2:2960579 8.94E-66 dispersed
Cone2ag0536 Cone-Chr2:2960579 Cone6ag0027 Cone-Chr6:172101 2.24E-75 dispersed
Cone16ag0479 Cone-Chr16:6955697 Cone2ag0536 Cone-Chr2:2960579 2.09e-315 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone2ag0536 Cone-Chr2:2960579 2.05E-23 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone4ag0599 Cone-Chr4:2739002 1.62E-45 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone4ag0520 Cone-Chr4:2323337 1.13E-182 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone6ag0541 Cone-Chr6:2670377 2.96E-25 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone7ag0493 Cone-Chr7:2269946 4.35E-175 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone9ag0551 Cone-Chr9:2624393 8.56E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45709 PF00667 FAD_binding_1 2.20E-45 CL0076 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone2ag0536 - - - 0.0